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Fix UP031 errors

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reported by ruff 0.8.0 .
This commit is contained in:
Nicola Soranzo
2024-11-24 21:35:23 +00:00
parent 1d99e6ddff
commit 26a4e146e0
28 changed files with 85 additions and 82 deletions
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scripts/tools/maf/check_loc_file.py
+5 -5
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@@ -40,19 +40,19 @@ def __main__():
# indexed species
for spec in indexed_for_species:
if spec not in species_indexed_in_maf:
print("Line %i, %s claims to be indexed for %s, but indexes do not exist." % (i, uid, spec))
print(f"Line {i}, {uid} claims to be indexed for {spec}, but indexes do not exist.")
for spec in species_indexed_in_maf:
if spec not in indexed_for_species:
print("Line %i, %s is indexed for %s, but is not listed in loc file." % (i, uid, spec))
print(f"Line {i}, {uid} is indexed for {spec}, but is not listed in loc file.")
# existing species
for spec in species_exist:
if spec not in species_found_in_maf:
print("Line %i, %s claims to have blocks for %s, but was not found in MAF files." % (i, uid, spec))
print(f"Line {i}, {uid} claims to have blocks for {spec}, but was not found in MAF files.")
for spec in species_found_in_maf:
if spec not in species_exist:
print("Line %i, %s contains %s, but is not listed in loc file." % (i, uid, spec))
print(f"Line {i}, {uid} contains {spec}, but is not listed in loc file.")
except Exception as e:
print("Line %i is invalid: %s" % (i, e))
print(f"Line {i} is invalid: {e}")
if __name__ == "__main__":