diff --git a/lib/galaxy/job_metrics/__init__.py b/lib/galaxy/job_metrics/__init__.py
index 0a9a39f0b2b..ab981cd6f3d 100644
--- a/lib/galaxy/job_metrics/__init__.py
+++ b/lib/galaxy/job_metrics/__init__.py
@@ -211,6 +211,8 @@ class JobInstrumenter(JobInstrumenterI):
                 properties = plugin.job_properties(job_id, job_directory)
                 if properties:
                     per_plugin_properties[plugin.plugin_type] = properties
+            except FileNotFoundError as e:
+                log.warning("Failed to collect job properties for plugin %s: %s", plugin, e)
             except Exception:
                 log.exception("Failed to collect job properties for plugin %s", plugin)
         return per_plugin_properties