From 1d8a2bd22f0f626a89435d1a9c8c77d08c391115 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Mon, 25 Oct 2021 17:46:35 -0400 Subject: [PATCH] Type clarifications visualization.genome. --- lib/galaxy/visualization/genomes.py | 4 ++-- setup.cfg | 2 -- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/lib/galaxy/visualization/genomes.py b/lib/galaxy/visualization/genomes.py index 1e780af553b..3624f087e3b 100644 --- a/lib/galaxy/visualization/genomes.py +++ b/lib/galaxy/visualization/genomes.py @@ -11,7 +11,7 @@ from galaxy.exceptions import ( ObjectNotFound, ReferenceDataError, ) -from galaxy.structured_app import MinimalManagerApp +from galaxy.structured_app import StructuredApp from galaxy.util.bunch import Bunch log = logging.getLogger(__name__) @@ -197,7 +197,7 @@ class Genomes: Provides information about available genome data and methods for manipulating that data. """ - def __init__(self, app: MinimalManagerApp): + def __init__(self, app: StructuredApp): self.app = app # Create list of genomes from app.genome_builds self.genomes: Dict[str, Genome] = {} diff --git a/setup.cfg b/setup.cfg index f63670c32f9..39e3aae4498 100644 --- a/setup.cfg +++ b/setup.cfg @@ -80,8 +80,6 @@ check_untyped_defs = False check_untyped_defs = False [mypy-galaxy.web.framework.middleware.error] check_untyped_defs = False -[mypy-galaxy.visualization.genomes] -check_untyped_defs = False [mypy-galaxy.visualization.data_providers.phyloviz.baseparser] check_untyped_defs = False [mypy-galaxy.util.topsort]