From a6efdc5a2b41979ae824611abdb17a633ed32aaf Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Sat, 10 Oct 2015 15:01:21 +0200 Subject: [PATCH] fix for strange package names --- .../galaxy_install/tool_dependencies/recipe/step_handler.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py index 6b6d90eed7c..082d2f86e95 100755 --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -999,7 +999,7 @@ class SetEnvironment( RecipeStep ): cmds = install_environment.environment_commands( 'set_environment' ) env_var_dicts = action_dict.get( 'environment_variable', [] ) root_dir_dict = dict( action='set_to', - name='%s_ROOT_DIR' % tool_dependency.name.upper(), + name='%s_ROOT_DIR' % tool_dependency.name.replace( '-', '_' ).upper(), value=install_environment.install_dir ) env_var_dicts.append( root_dir_dict ) for env_var_dict in env_var_dicts: