From 163e4bc200adc5f80860d83451fe1a2c8e1024d6 Mon Sep 17 00:00:00 2001
From: Wen-Yu Chung <wychung@bx.psu.edu>
Date: Mon, 31 Mar 2008 19:24:56 +0000
Subject: [PATCH]

---
 tool_conf.xml.sample                       | 2 ++
 tools/metag_tools/blat_coverage_report.xml | 4 ++--
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/tool_conf.xml.sample b/tool_conf.xml.sample
index d4304718325..3f7fcd8d8a8 100644
--- a/tool_conf.xml.sample
+++ b/tool_conf.xml.sample
@@ -269,5 +269,7 @@
     <tool file="metag_tools/megablast_wrapper.xml" />
     <tool file="metag_tools/megablast_xml_parser.xml" />
     <tool file="metag_tools/blat_coverage_report.xml" />
+    <tool file="metag_tools/blat_mapping.xml" />
+    <tool file="metag_tools/convert_SOLiD_color2nuc.xml" />
   </section>
 </toolbox>
diff --git a/tools/metag_tools/blat_coverage_report.xml b/tools/metag_tools/blat_coverage_report.xml
index 32f274b231d..69dfdf7f670 100644
--- a/tools/metag_tools/blat_coverage_report.xml
+++ b/tools/metag_tools/blat_coverage_report.xml
@@ -1,4 +1,4 @@
-<tool id="generate_coverage_report" name="Coverage of the Reads">
+<tool id="generate_coverage_report" name="Show Polymorphism of the Reads">
 	<description>showing the percentage of reads supporting each nucleotide</description>
 	<command interpreter="python">blat_coverage_report.py $input1 $output1</command>
 	<inputs>	
@@ -73,7 +73,7 @@
 
 **Reference**
  
- BLAT: Kent, W James, BLAT--the BLAST-like alignment tool. (2002) Genome Research:12(4) 656-664.
+ **BLAT**: Kent, W James, BLAT--the BLAST-like alignment tool. (2002) Genome Research:12(4) 656-664.
 	
 	</help>
 </tool>