diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 4876142723d..c2558500a96 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -60,8 +60,6 @@ Enhancements Bug fixes ========= -* -* * read job_conf directly from `config_dir` instead of computing it again from `config_file` by `@bernt-matthias `_ in `#15596 `_ * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Fix filesource file url support by `@nuwang `_ in `#15794 `_ @@ -117,8 +115,6 @@ Bug fixes Enhancements ============ -* -* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ @@ -204,9 +200,6 @@ Other changes Bug fixes ========= -* -* -* * Fix upload paramfile handling (for real user setups) by `@bernt-matthias `_ in `#16504 `_ * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek `_ in `#16569 `_ @@ -220,9 +213,6 @@ Bug fixes Enhancements ============ -* -* -* * Update pulsar client library to 0.15.5 by `@mvdbeek `_ in `#16701 `_ ------------------- @@ -234,10 +224,6 @@ Enhancements Bug fixes ========= -* -* -* -* * Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by `@bernt-matthias `_ in `#16403 `_ * Fix test discovery in vscode by `@mvdbeek `_ in `#16413 `_ * Fixes for (gitlab) error reporting by `@bernt-matthias `_ in `#16424 `_ @@ -251,11 +237,6 @@ Bug fixes Bug fixes ========= -* -* -* -* -* * Fix default when statement evaluation by `@mvdbeek `_ in `#16332 `_ * Redact private role name and description when purging user by `@mvdbeek `_ in `#16349 `_ @@ -268,31 +249,18 @@ Bug fixes Bug fixes ========= -* -* -* -* -* -* * Bump galaxy-release-util version to 0.1.2 by `@mvdbeek `_ in `#16241 `_ ============ Enhancements ============ -* -* -* -* * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ ============= Other changes ============= -* -* -* * Forward port of slugify username received from oidc by `@nuwang `_ in `#16271 `_ ------------------- @@ -304,26 +272,12 @@ Other changes Bug fixes ========= -* -* -* -* -* -* -* * Fix ``Text File Busy`` errors at the source by `@mvdbeek `_ in `#16212 `_ ============ Enhancements ============ -* -* -* -* -* -* -* * Point release deps fixes and docs by `@mvdbeek `_ in `#16214 `_ * Use galaxy-release-util to upload python packages by `@mvdbeek `_ in `#16240 `_ @@ -336,14 +290,6 @@ Enhancements Bug fixes ========= -* -* -* -* -* -* -* -* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek `_ in `#15927 `_ * Update Gravity to 1.0.3 by `@natefoo `_ in `#15939 `_ @@ -367,13 +313,6 @@ Bug fixes Other changes ============= -* -* -* -* -* -* -* * Startup fix when tool removed between reboot by `@mvdbeek `_ in `#16175 `_ ------------------- diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 613217048da..02ad6e7c02e 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -48,8 +48,6 @@ Enhancements Bug fixes ========= -* -* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Improve container resolver documentation by `@mvdbeek `_ in `#16280 `_ * Limit tool document cache to tool configs with explicit cache path by `@mvdbeek `_ in `#16537 `_ @@ -60,8 +58,6 @@ Bug fixes Enhancements ============ -* -* * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ * Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 `_ in `#15110 `_ @@ -105,9 +101,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Minor bug fix for default mail templates by `@neoformit `_ in `#16362 `_ ------------------- @@ -137,20 +130,12 @@ No recorded changes since last release Bug fixes ========= -* -* -* -* -* * Change default watchdog inotify_buffer log level to info by `@mvdbeek `_ in `#15967 `_ ============ Enhancements ============ -* -* -* * Add ``ca_certs`` option for sentry client by `@mvdbeek `_ in `#15943 `_ ------------------- diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index aef97023407..95f167fa251 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -46,7 +46,6 @@ Bug fixes Bug fixes ========= -* * Skip change_datatype things if we're not actually changing the extension by `@mvdbeek `_ in `#16931 `_ * Fix copying metadata to copied job outputs by `@mvdbeek `_ in `#17007 `_ * Update tar_to_directory dependency by `@mvdbeek `_ in `#17009 `_ @@ -70,8 +69,6 @@ Enhancements Bug fixes ========= -* -* * Fix bad auto-merge of dev. by `@jmchilton `_ in `#15386 `_ * Merge conflicting db migration branches into one by `@jdavcs `_ in `#15771 `_ * Enable ``strict_equality`` mypy option by `@nsoranzo `_ in `#15808 `_ @@ -102,8 +99,6 @@ Bug fixes Enhancements ============ -* -* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ * Towards decoupling datatypes and model by `@jdavcs `_ in `#15186 `_ @@ -162,9 +157,6 @@ Other changes Bug fixes ========= -* -* -* * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Don't fail invocation message without dependent_workflow_step_id by `@mvdbeek `_ in `#16628 `_ @@ -177,10 +169,6 @@ Bug fixes Bug fixes ========= -* -* -* -* * Copy when_expression when copying workflow step by `@mvdbeek `_ in `#16377 `_ ------------------- @@ -210,11 +198,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* -* -* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix folder listing via file browser by `@mvdbeek `_ in `#15950 `_ * Fix RO-crate invocation export with complex collections by `@davelopez `_ in `#15971 `_ diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 1d1d155c6d8..2f151ca4988 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -46,8 +46,6 @@ Bug fixes Bug fixes ========= -* -* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Fix filesource file url support by `@nuwang `_ in `#15794 `_ * Fix unittest mocks to support us checking geturl() by `@dannon `_ in `#16726 `_ @@ -92,9 +90,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Fix dropbox import to support newer versions by `@nuwang `_ in `#16239 `_ ------------------- diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index c425f0b8fdb..ff599b88a00 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -43,8 +43,6 @@ Bug fixes Bug fixes ========= -* -* * Fix tags ownership by `@davelopez `_ in `#16339 `_ * Push to object store even if ``set_meta`` fails by `@mvdbeek `_ in `#16667 `_ * Fix metadata setting in extended metadata + outputs_to_working_directory mode by `@mvdbeek `_ in `#16678 `_ @@ -73,9 +71,6 @@ Enhancements Bug fixes ========= -* -* -* * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek `_ in `#16569 `_ * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index c43b2904b5a..d99123b48d9 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -67,9 +67,6 @@ Other changes Bug fixes ========= -* -* -* * Fix extra files path handling by `@mvdbeek `_ in `#16541 `_ * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 78ba25bfd55..f3d6772ea6b 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -92,9 +92,6 @@ No recorded changes since last release Enhancements ============ -* -* -* * Port selenium setup to non-deprecated selenium options by `@mvdbeek `_ in `#16215 `_ ------------------- @@ -106,14 +103,6 @@ Enhancements Enhancements ============ -* -* -* -* -* -* -* -* * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ ------------------- diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index 658fb2d35cf..4c06a8ddc56 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -54,8 +54,6 @@ Enhancements Bug fixes ========= -* -* * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ * allow anon access for api/datasets/get_content_as_text by `@martenson `_ in `#16226 `_ * qualify querying for an api-key by `@martenson `_ in `#16320 `_ @@ -77,8 +75,6 @@ Bug fixes Enhancements ============ -* -* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Outline Deployment Tests by `@jmchilton `_ in `#15420 `_ * Unify url handling with filesources by `@nuwang `_ in `#15497 `_ @@ -131,9 +127,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Fix folder listing via file browser by `@mvdbeek `_ in `#15950 `_ * Fix case sensitive filtering by name in histories by `@davelopez `_ in `#16036 `_ @@ -144,9 +137,6 @@ Bug fixes Enhancements ============ -* -* -* * Add support for launching workflows via Tutorial Mode by `@hexylena `_ in `#15684 `_ * Allow setting auto_decompress property in staging interface by `@mvdbeek `_ in `#16014 `_ diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 84a618ede78..a40244ea2e6 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -41,8 +41,6 @@ Bug fixes Bug fixes ========= -* -* * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ ============ @@ -103,9 +101,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Ensure history export contains all expected datasets by `@davelopez `_ in `#16013 `_ * Fix extended metadata file size handling by `@mvdbeek `_ in `#16109 `_ diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 207dfc32fa3..d566a55085d 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -41,8 +41,6 @@ Bug fixes Bug fixes ========= -* -* * Backport tool mem fixes by `@mvdbeek `_ in `#16601 `_ * Fix allowlist deserialization in file sources by `@mvdbeek `_ in `#16729 `_ diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index a499cb4f4df..f3e89080469 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -54,8 +54,6 @@ Enhancements Bug fixes ========= -* -* * Fixes for two framework test tools by `@bernt-matthias `_ in `#15483 `_ * add missing f for f-string by `@bernt-matthias `_ in `#15584 `_ * Fix call to `docker_cached_container_description` by `@bernt-matthias `_ in `#15598 `_ @@ -77,8 +75,6 @@ Bug fixes Enhancements ============ -* -* * Decompress history data for testing assertions by `@bernt-matthias `_ in `#15085 `_ * OIDC tokens by `@SergeyYakubov `_ in `#15300 `_ * Fix for new style conda packages by `@bernt-matthias `_ in `#15446 `_ @@ -115,9 +111,6 @@ Other changes Bug fixes ========= -* -* -* * Fixes for extra files handling and cached object stores by `@mvdbeek `_ in `#16595 `_ * Fix create/install commands for conda 23.9.0 by `@nsoranzo `_ in `#16831 `_ @@ -130,10 +123,6 @@ Bug fixes Bug fixes ========= -* -* -* -* * Allow duplicate labels in linter if outputs contain filters by `@bernt-matthias `_ in `#15933 `_ * Fix parsing tool metadata from bio.tools by `@kysrpex `_ in `#16449 `_ * Linter: fix regex for profile version by `@bernt-matthias `_ in `#16480 `_ @@ -154,11 +143,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* -* -* * xsd: add missing `sep` attribute for `has_n_columns` by `@bernt-matthias `_ in `#16262 `_ * Missing init prevents models.py being bundled into tool_util by `@nuwang `_ in `#16308 `_ @@ -166,9 +150,6 @@ Bug fixes Enhancements ============ -* -* -* * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ ------------------- @@ -180,13 +161,6 @@ Enhancements Bug fixes ========= -* -* -* -* -* -* -* * Don't fail CWL tool parsing when Cheetah not installed by `@mvdbeek `_ in `#16219 `_ * Allow skipping ``expect_num_outputs`` when ``expect_failure`` is set in tool test by `@bernt-matthias `_ in `#16237 `_ @@ -199,14 +173,6 @@ Bug fixes Bug fixes ========= -* -* -* -* -* -* -* -* * Fix assertion linting to not fail on byte suffixes by `@bernt-matthias `_ in `#15873 `_ * Fix ``get_test_from_anaconda()`` and ``base_image_for_targets()`` functions by `@nsoranzo `_ in `#16125 `_ * Fix test search for mulled container hashes by `@mvdbeek `_ in `#16170 `_ @@ -215,13 +181,6 @@ Bug fixes Enhancements ============ -* -* -* -* -* -* -* * Allow setting auto_decompress property in staging interface by `@mvdbeek `_ in `#16014 `_ ------------------- diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 02a5e737d79..1e9a9e098a3 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -55,8 +55,6 @@ Bug fixes Enhancements ============ -* -* * Various Tool Shed Cleanup by `@jmchilton `_ in `#15247 `_ * Protection against problematic boolean parameters. by `@jmchilton `_ in `#15493 `_ * Unify url handling with filesources by `@nuwang `_ in `#15497 `_ @@ -108,9 +106,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Replace httpbin service with pytest-httpserver by `@mvdbeek `_ in `#16042 `_ ------------------- diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index f34651528cc..eb0d608fe5d 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -40,7 +40,6 @@ Bug fixes Bug fixes ========= -* * Provide error message instead of internal server error by `@mvdbeek `_ in `#16905 `_ * Fix input dates in notifications: consider timezone offset by `@davelopez `_ in `#17088 `_ @@ -59,8 +58,6 @@ Enhancements Bug fixes ========= -* -* * Create ToolSuccess route and refactor component by `@ahmedhamidawan `_ in `#15484 `_ * fix premature return in user API by `@martenson `_ in `#15781 `_ * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -81,8 +78,6 @@ Bug fixes Enhancements ============ -* -* * Empower Users to Select Storage Destination by `@jmchilton `_ in `#14073 `_ * Add Storage Dashboard visualizations for histories by `@davelopez `_ in `#14820 `_ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ @@ -140,9 +135,6 @@ Other changes Bug fixes ========= -* -* -* * Fix incorrect ASGI request host by `@davelopez `_ in `#16574 `_ * Allow the legacy DELETE dataset endpoint to accept any string for the history_id by `@assuntad23 `_ in `#16593 `_ @@ -155,10 +147,6 @@ Bug fixes Bug fixes ========= -* -* -* -* * Fix active step display in workflow editor side panel by `@mvdbeek `_ in `#16364 `_ ------------------- @@ -170,11 +158,6 @@ Bug fixes Bug fixes ========= -* -* -* -* -* * Fix folder access for anonymous user by `@mvdbeek `_ in `#16330 `_ ------------------- @@ -186,21 +169,12 @@ Bug fixes Bug fixes ========= -* -* -* -* -* -* * Fix converting Enum value to str for Python 3.11 by `@nsoranzo `_ in `#16284 `_ ============ Enhancements ============ -* -* -* * When importing tool data bundles, use the first loc file for the matching table by `@natefoo `_ in `#16247 `_ ------------------- @@ -218,13 +192,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* -* -* -* -* * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek `_ in `#15744 `_ * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ * Fix dataype_change not updating HDCA update_time by `@mvdbeek `_ in `#16099 `_ diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index a2f3fdd72e0..0215999b40a 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -47,8 +47,6 @@ Enhancements Bug fixes ========= -* -* * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Ensure session is request-scoped for legacy endpoints by `@jdavcs `_ in `#16207 `_ @@ -56,8 +54,6 @@ Bug fixes Enhancements ============ -* -* * Update Python dependencies by `@galaxybot `_ in `#15435 `_ * Don't error on missing parameters or unused parameters in UI controllers by `@mvdbeek `_ in `#16246 `_ @@ -70,9 +66,6 @@ Enhancements Bug fixes ========= -* -* -* * Don't read request body into memory by `@mvdbeek `_ in `#16585 `_ ------------------- @@ -84,10 +77,6 @@ Bug fixes Bug fixes ========= -* -* -* -* * Media player fix issue 16415 by `@bdwheele `_ in `#16443 `_ * Fix static file serving for ``robots.txt`` and ``favicon.ico`` when using per_host settings by `@mira-miracoli `_ in `#16459 `_ @@ -118,11 +107,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* -* -* * Various fixes to path prefix handling by `@mvdbeek `_ in `#16033 `_ ------------------- diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index f9bc2aabea5..9018dec18f8 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -67,9 +67,6 @@ No recorded changes since last release Bug fixes ========= -* -* -* * Don't attempt to call a bool when using mem-self handler assignment. by `@natefoo `_ in `#16359 `_ -------------------