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Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

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MAF tool interfaces now support the use of index species and all species existing in cached alignment sets.
Until main is updated and the old maf_location files can be overwritten, these symbolic links are required:
maf_index.loc -> /depot/data2/galaxy/maf_index_new.loc
maf_pairwise.loc -> /depot/data2/galaxy/maf_pairwise_new.loc
This commit is contained in:
Daniel Blankenberg
2008-05-29 17:38:46 +00:00
parent c0a5ecf2dd
commit 11a2c767c3
37 changed files with 626 additions and 741 deletions
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tools/data_source/encode_import_gencode.xml
+14 -4
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@@ -7,14 +7,24 @@
</display>
<param name="hg17" type="select" display="checkboxes" multiple="true">
<options from_file="encode_datasets.loc">
<filter type="param" name="encode_group" value="GENCODE" />
<filter type="param" name="dbkey" value="hg17" />
<column name="name" index="2"/>
<column name="value" index="3"/>
<column name="dbkey" index="1"/>
<column name="encode_group" index="0"/>
<column name="uid" index="3"/>
<filter type="static_value" name="encode_group" value="GENCODE" column="0"/>
<filter type="static_value" name="dbkey" value="hg17" column="1"/>
</options>
</param>
<param name="hg16" type="select" display="checkboxes" multiple="true">
<options from_file="encode_datasets.loc">
<filter type="param" name="encode_group" value="GENCODE" />
<filter type="param" name="dbkey" value="hg16" />
<column name="name" index="2"/>
<column name="value" index="3"/>
<column name="dbkey" index="1"/>
<column name="encode_group" index="0"/>
<column name="uid" index="3"/>
<filter type="static_value" name="encode_group" value="GENCODE" column="0"/>
<filter type="static_value" name="dbkey" value="hg16" column="1"/>
</options>
</param>
</inputs>