From 1173ce6cf9fc2b46da127e1177fd12a2bbc60bb0 Mon Sep 17 00:00:00 2001
From: Evgeny Anatskiy <evgeny.anatskiy@gmail.com>
Date: Wed, 29 Nov 2017 13:10:40 +0100
Subject: [PATCH] add copy&paste feature

---
 .../scripts/mvc/workflow/workflow-canvas.js   | 23 +++++++++++++++++++
 static/scripts/bundled/workflow.bundled.js    |  2 +-
 .../scripts/mvc/workflow/workflow-canvas.js   |  2 +-
 3 files changed, 25 insertions(+), 2 deletions(-)

diff --git a/client/galaxy/scripts/mvc/workflow/workflow-canvas.js b/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
index f1417aac7a9..ef5b1a52d9f 100644
--- a/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
+++ b/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
@@ -7,6 +7,8 @@ function CanvasManager(app, canvas_viewport, overview) {
     this.ov = overview.find("#overview-viewport");
     // Make overview box draggable
     this.init_drag();
+    // Initialize Copy & Paste events
+    this.init_copy_paste();
 }
 $.extend(CanvasManager.prototype, {
     init_drag: function() {
@@ -96,6 +98,27 @@ $.extend(CanvasManager.prototype, {
                 only be done by dragging the borders */
         $("#overview-border div").bind("drag", () => {});
     },
+    init_copy_paste: function() {
+        document.addEventListener('copy', (e) => {
+            if (this.app.workflow.active_node) {
+                e.clipboardData.setData('application/json', JSON.stringify({
+                    nodeId: this.app.workflow.active_node.id
+                }));
+            }
+            e.preventDefault();
+        });
+
+        document.addEventListener('paste', (e) => {
+            var nodeId;
+            try {
+                nodeId = JSON.parse(e.clipboardData.getData('application/json')).nodeId;
+            } catch (error) {}
+            if (nodeId && this.app.workflow.nodes.hasOwnProperty(nodeId)) {
+                this.app.workflow.nodes[nodeId].clone();
+            }
+            e.preventDefault();
+        });
+    },
     update_viewport_overlay: function() {
         var cc = this.cc;
         var cv = this.cv;
diff --git a/static/scripts/bundled/workflow.bundled.js b/static/scripts/bundled/workflow.bundled.js
index 9dc38e7ec03..f89eae71848 100644
--- a/static/scripts/bundled/workflow.bundled.js
+++ b/static/scripts/bundled/workflow.bundled.js
@@ -4,4 +4,4 @@ webpackJsonp([5],[,,,,function(t,e,i){"use strict";(function(t,n,o){function a(t
  * @author   Feross Aboukhadijeh <feross@feross.org> <http://feross.org>
  * @license  MIT
  */
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d=t("#canvas-container").position(),h=t("#canvas-container").parent(),f=a.width(),p=a.height();return a.css({left:-d.left+h.width()/2-f/2,top:-d.top+h.height()/2-p/2}),c.prependTo(a.find(".toolFormTitle")),f+=c.width()+10,a.css("width",f),a.bind("dragstart",function(){o.workflow.activate_node(l)}).bind("dragend",function(){o.workflow.node_changed(this),o.workflow.fit_canvas_to_nodes(),o.canvas_manager.draw_overview()}).bind("dragclickonly",function(){o.workflow.activate_node(l)}).bind("drag",function(e,i){var n=t(this).offsetParent().offset(),o=i.offsetX-n.left,a=i.offsetY-n.top;t(this).css({left:o,top:a}),t(this).find(".terminal").each(function(){this.terminal.redraw()})}),l}})}).call(e,i(0),i(1),i(2))},function(t,e,i){"use strict";(function(t){function n(t,e){this.app=t,this.canvas_container=e,this.id_counter=0,this.nodes={},this.name=null,this.has_changes=!1,this.active_form_has_changes=!1,this.workflowOutputLabels={}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(223),a=function(t){return t&&t.__esModule?t:{default:t}}(o),r=i(42),s=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r);t.extend(n.prototype,{canLabelOutputWith:function(t){return!t||!(t in this.workflowOutputLabels)},registerOutputLabel:function(t){t&&(this.workflowOutputLabels[t]=!0)},unregisterOutputLabel:function(t){t&&delete this.workflowOutputLabels[t]},updateOutputLabel:function(t,e){t&&this.unregisterOutputLabel(t),this.canLabelOutputWith(e)||s.warning("Workflow contains duplicate workflow output labels "+e+". This must be fixed before it can be saved."),e&&this.registerOutputLabel(e)},attemptUpdateOutputLabel:function(t,e,i){return!!this.canLabelOutputWith(i)&&(t.labelWorkflowOutput(e,i),t.nodeView.redrawWorkflowOutputs(),!0)},create_node:function(t,e,i){var n=this.app.prebuildNode(t,e,i);return this.add_node(n),this.fit_canvas_to_nodes(),this.app.canvas_manager.draw_overview(),this.activate_node(n),n},add_node:function(t){t.id=this.id_counter,t.element.attr("id","wf-node-step-"+t.id),this.id_counter++,this.nodes[t.id]=t,this.has_changes=!0,t.workflow=this},remove_node:function(t){this.active_node==t&&this.clear_active_node(),delete this.nodes[t.id],this.has_changes=!0},remove_all:function(){var e=this;t.each(this.nodes,function(t,i){i.destroy(),e.remove_node(i)})},rectify_workflow_outputs:function(){var e=!1,i=!1;if(t.each(this.nodes,function(n,o){o.workflow_outputs&&o.workflow_outputs.length>0&&(e=!0),t.each(o.post_job_actions,function(t,e){"HideDatasetAction"===e.action_type&&(i=!0)})}),!1!==e||!1!==i){var n=this;t.each(this.nodes,function(i,o){if("tool"===o.type){var a=!1;null===o.post_job_actions&&(o.post_job_actions={},a=!0);var r=[];t.each(o.post_job_actions,function(t,e){"HideDatasetAction"==e.action_type&&r.push(t)}),r.length>0&&t.each(r,function(t,e){a=!0,delete o.post_job_actions[e]}),e&&t.each(o.output_terminals,function(t,e){if(!0==!o.isWorkflowOutput(e.name)){a=!0;var i={action_type:"HideDatasetAction",output_name:e.name,action_arguments:{}};o.post_job_actions["HideDatasetAction"+e.name]=null,o.post_job_actions["HideDatasetAction"+e.name]=i}}),n.active_node==o&&!0===a&&n.reload_active_node()}})}},to_simple:function(){var e={};return t.each(this.nodes,function(i,n){var o={};t.each(n.input_terminals,function(e,i){o[i.name]=null;var n=[];t.each(i.connectors,function(t,e){if(e.handle1){var a={id:e.handle1.node.id,output_name:e.handle1.name},r=i.attributes.input.input_subworkflow_step_id;void 0!==r&&(a.input_subworkflow_step_id=r),n[t]=a,o[i.name]=n}})});var a={};n.post_job_actions&&t.each(n.post_job_actions,function(t,e){var i={action_type:e.action_type,output_name:e.output_name,action_arguments:e.action_arguments};a[e.action_type+e.output_name]=null,a[e.action_type+e.output_name]=i}),n.workflow_outputs||(n.workflow_outputs=[]);var r={id:n.id,type:n.type,content_id:n.content_id,tool_version:n.config_form.version,tool_state:n.tool_state,errors:n.errors,input_connections:o,position:t(n.element).position(),annotation:n.annotation,post_job_actions:n.post_job_actions,uuid:n.uuid,label:n.label,workflow_outputs:n.workflow_outputs};e[n.id]=r}),{steps:e}},from_simple:function(e,i){var n=void 0===i||i,o=this,r=0;n?o.name=e.name:r=Object.keys(o.nodes).length;var s=r,l=!1;t.each(e.steps,function(e,i){var a=o.app.prebuildNode(i.type,i.name,i.content_id);n||(i.uuid=null,t.each(i.workflow_outputs,function(t,e){e.uuid=null})),a.init_field_data(i),i.position&&a.element.css({top:i.position.top,left:i.position.left}),a.id=parseInt(i.id)+r,o.nodes[a.id]=a,s=Math.max(s,parseInt(e)+r),l||(a.workflow_outputs.length>0?l=!0:t.each(a.post_job_actions||[],function(t,e){"HideDatasetAction"===e.action_type&&(l=!0)}))}),o.id_counter=s+1,t.each(e.steps,function(e,i){var n=o.nodes[parseInt(e)+r];t.each(i.input_connections,function(e,i){i&&(t.isArray(i)||(i=[i]),t.each(i,function(t,i){var s=o.nodes[parseInt(i.id)+r],l=new a.default;l.connect(s.output_terminals[i.output_name],n.input_terminals[e]),l.redraw()}))}),l&&t.each(n.output_terminals,function(e,i){if(void 0===n.post_job_actions["HideDatasetAction"+i.name]){n.addWorkflowOutput(i.name);t(n.element).find(".callout."+i.name).find("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"),o.has_changes=!0}})})},check_changes_in_active_form:function(){this.active_form_has_changes&&(this.has_changes=!0,t("#right-content").find("form").submit(),this.active_form_has_changes=!1)},reload_active_node:function(){if(this.active_node){var t=this.active_node;this.clear_active_node(),this.activate_node(t)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),this.app.showAttributes()},activate_node:function(t){this.active_node!=t&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(t.config_form,t),t.make_active(),this.active_node=t)},node_changed:function(t,e){this.has_changes=!0,this.active_node==t&&e&&(this.check_changes_in_active_form(),this.app.showForm(t.config_form,t)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var e={},i={};t.each(this.nodes,function(t,n){void 0===e[t]&&(e[t]=0),void 0===i[t]&&(i[t]=[])}),t.each(this.nodes,function(n,o){t.each(o.input_terminals,function(n,a){t.each(a.connectors,function(t,n){var a=n.handle1.node;e[o.id]+=1,i[a.id].push(o.id)})})});for(var n=[];;){var o=[];for(var a in e)0===e[a]&&o.push(a);if(0===o.length)break;n.push(o);for(var r in o){var s=o[r];delete e[s];for(var l in i[s])e[i[s][l]]-=1}}if(!e.length){var u=this.nodes,c=80;t.each(n,function(e,i){i.sort(function(e,i){return t(u[e].element).position().top-t(u[i].element).position().top});var n=0,o=30;t.each(i,function(e,i){var a=u[i],r=t(a.element);t(r).css({top:o,left:c}),n=Math.max(n,t(r).width()),o+=t(r).height()+30}),c+=n+80}),t.each(u,function(t,e){e.redraw()})}},bounds_for_all_nodes:function(){var e,i=1/0,n=-1/0,o=1/0,a=-1/0;return t.each(this.nodes,function(r,s){var l=t(s.element);e=l.position(),i=Math.min(i,e.left),n=Math.max(n,e.left+l.width()),o=Math.min(o,e.top),a=Math.max(a,e.top+l.width())}),{xmin:i,xmax:n,ymin:o,ymax:a}},fit_canvas_to_nodes:function(){function e(t,e){return Math.ceil(t/e)*e}function i(t,e){if(t<e||t>3*e){return-(t-(Math.ceil(t%e/e)+1)*e)}return 0}var n=this.bounds_for_all_nodes(),o=this.canvas_container.position(),a=this.canvas_container.parent(),r=i(n.xmin,100),s=i(n.ymin,100);r=Math.max(r,o.left),s=Math.max(s,o.top);var l=o.left-r,u=o.top-s,c=e(n.xmax+100,100)+r,d=e(n.ymax+100,100)+s;c=Math.max(c,-l+a.width()),d=Math.max(d,-u+a.height()),this.canvas_container.css({left:l,top:u,width:c,height:d}),this.canvas_container.children().each(function(){var e=t(this).position();t(this).css("left",e.left+r),t(this).css("top",e.top+s)})}}),e.default=n}).call(e,i(0))},function(t,e,i){"use strict";(function(t){function i(t,e,i){this.app=t,this.cv=e,this.cc=this.cv.find("#canvas-container"),this.overview=i,this.oc=i.find("#overview-canvas"),this.ov=i.find("#overview-viewport"),this.init_drag()}function n(t){this.panel=t}Object.defineProperty(e,"__esModule",{value:!0}),t.extend(i.prototype,{init_drag:function(){var e=this,i=function(t,i){t=Math.min(t,e.cv.width()/2),t=Math.max(t,-e.cc.width()+e.cv.width()/2),i=Math.min(i,e.cv.height()/2),i=Math.max(i,-e.cc.height()+e.cv.height()/2),e.cc.css({left:t,top:i}),e.cv.css({"background-position-x":t,"background-position-y":i}),e.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new n(this)});var o,a;this.cv.bind("dragstart",function(){var i=t(this).offset(),n=e.cc.position();a=n.top-i.top,o=n.left-i.left}).bind("drag",function(t,e){i(e.offsetX+o,e.offsetY+a)}).bind("dragend",function(){e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}),this.overview.click(function(t){if(e.overview.hasClass("blockaclick"))e.overview.removeClass("blockaclick");else{var n=e.cc.width(),o=e.cc.height(),a=e.oc.width(),r=e.oc.height(),s=t.pageX-e.oc.offset().left-e.ov.width()/2,l=t.pageY-e.oc.offset().top-e.ov.height()/2;i(-s/a*n,-l/r*o),e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}}),this.ov.bind("drag",function(t,n){var o=e.cc.width(),a=e.cc.height(),r=e.oc.width(),s=e.oc.height(),l=n.offsetX-e.overview.offset().left,u=n.offsetY-e.overview.offset().top;i(-l/r*o,-u/s*a)}).bind("dragend",function(){e.overview.addClass("blockaclick"),e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}),t("#overview-border").bind("drag",function(i,n){var o=t(this).offsetParent(),a=o.offset(),r=Math.max(o.width()-(n.offsetX-a.left),o.height()-(n.offsetY-a.top));t(this).css({width:r,height:r}),e.draw_overview()}),t("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var t=this.cc,e=this.cv,i=this.oc,n=this.ov,o=t.width(),a=t.height(),r=i.width(),s=i.height(),l=t.position();n.css({left:-l.left/o*r,top:-l.top/a*s,width:e.width()/o*r-2,height:e.height()/a*s-2})},draw_overview:function(){var e,i,n,o,a=t("#overview-canvas"),r=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=t("#canvas-container").width(),u=t("#canvas-container").height(),c=this.cv.width(),d=this.cv.height();l<c&&u<d?(n=l/c*r,o=(r-n)/2,e=u/d*r,i=(r-e)/2):l<u?(i=0,e=r,n=Math.ceil(e*l/u),o=(r-n)/2):(n=r,o=0,e=Math.ceil(n*u/l),i=(r-e)/2),a.parent().css({left:o,top:i,width:n,height:e}),a.attr("width",n),a.attr("height",e),t.each(this.app.workflow.nodes,function(i,o){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=t(o.element),r=a.position(),c=r.left/l*n,d=r.top/u*e,h=a.width()/l*n,f=a.height()/u*e;o.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==o.workflow_outputs&&o.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(c,d,h,f),s.strokeRect(c,d,h,f)}),this.update_viewport_overlay()}}),t.extend(n.prototype,{test:function(e,i){clearTimeout(this.timeout);var n=e.pageX,o=e.pageY,a=t(this.panel),r=a.position(),s=a.width(),l=a.height(),u=a.parent(),c=u.width(),d=u.height(),h=u.offset(),f=h.left,p=h.top,m=f+u.width(),v=p+u.height(),g=-(s-c/2),_=-(l-d/2),w=c/2,b=d/2,y=!1;if(n-5<f){if(r.left<w){var x=Math.min(23,w-r.left);a.css("left",r.left+x),y=!0}}else if(n+5>m){if(r.left>g){var x=Math.min(23,r.left-g);a.css("left",r.left-x),y=!0}}else if(o-5<p){if(r.top<b){var x=Math.min(23,b-r.top);a.css("top",r.top+x),y=!0}}else if(o+5>v&&r.top>_){var x=Math.min(23,r.top-g);a.css("top",r.top-x+"px"),y=!0}if(y){i();var a=this;this.timeout=setTimeout(function(){a.test(e,i)},50)}},stop:function(t,e){clearTimeout(this.timeout)}}),e.default=i}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,o){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),s=a(r),l=i(283),u=a(l),c=t.Model.extend({initialize:function(t,e){this.app=t,this.element=e.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(t){return n.findWhere(this.workflow_outputs,{output_name:t})},isWorkflowOutput:function(t){return void 0!==this.getWorkflowOutput(t)},removeWorkflowOutput:function(t){for(;this.isWorkflowOutput(t);)this.workflow_outputs.splice(this.getWorkflowOutput(t),1)},addWorkflowOutput:function(t,e){if(!this.isWorkflowOutput(t)){var i={output_name:t};return e&&(i.label=e),this.workflow_outputs.push(i),!0}return!1},labelWorkflowOutput:function(t,e){var i=!1,n=null;if(this.isWorkflowOutput(t)){var o=this.getWorkflowOutput(t);n=o.label,o.label=e,i=n!=e}else i=this.addWorkflowOutput(t,e);return i&&(this.app.workflow.updateOutputLabel(n,e),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),i},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.connectors.length>0&&e.push(i)}),e},hasConnectedOutputTerminals:function(){var t=this.output_terminals;for(var e in t)if(t[e].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var t=this.input_terminals;for(var e in t){var i=t[e];if(i.connectors.length>0&&i.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.mapOver().isCollection&&i.connectors.length>0&&e.push(i)}),e},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.mapOver().isCollection&&e.push(i)}),e},hasMappedOverInputTerminals:function(){var t=!1;return n.each(this.input_terminals,function(e){e.mapOver().isCollection&&(t=!0)}),t},redraw:function(){o.each(this.input_terminals,function(t,e){e.redraw()}),o.each(this.output_terminals,function(t,e){e.redraw()})},clone:function(){var t=this,e={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},i=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(n){var o=Object.assign({},n,e);i.init_field_data(o),i.update_field_data(o),t.app.workflow.activate_node(i)}})},destroy:function(){o.each(this.input_terminals,function(t,e){e.destroy()}),o.each(this.output_terminals,function(t,e){e.destroy()}),this.app.workflow.remove_node(this),o(this.element).remove()},make_active:function(){o(this.element).addClass("toolForm-active")},make_inactive:function(){var t=this.element.get(0);!function(e){e.removeChild(t),e.appendChild(t)}(t.parentNode),o(t).removeClass("toolForm-active")},init_field_data:function(t){t.type&&(this.type=t.type),this.name=t.name,this.config_form=t.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=t.tool_state,this.errors=t.errors,this.tooltip=t.tooltip?t.tooltip:"",this.annotation=t.annotation,this.post_job_actions=t.post_job_actions?t.post_job_actions:{},this.label=t.label,this.uuid=t.uuid,this.workflow_outputs=t.workflow_outputs?t.workflow_outputs:[];var e=this,i=new u.default({el:this.element[0],node:e});e.nodeView=i,o.each(t.data_inputs,function(t,e){i.addDataInput(e)}),t.data_inputs.length>0&&t.data_outputs.length>0&&i.addRule(),o.each(t.data_outputs,function(t,e){i.addDataOutput(e)}),i.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(t){var e=this,i=e.nodeView,a=[];if(o.each(i.outputViews,function(e,i){var o=i.output.name,r=t.data_outputs,s=!1;n.each(r,function(t){t.name==o&&(s=!0)}),!1===s&&a.push(o)}),n.each(a,function(t){n.each(i.outputViews[t].terminalElement.terminal.connectors,function(t){t&&t.destroy()}),i.outputViews[t].remove(),delete i.outputViews[t],delete e.output_terminals[t]}),o.each(e.workflow_outputs,function(t,i){i&&!e.output_terminals[i.output_name]&&e.workflow_outputs.splice(t,1)}),o.each(t.data_outputs,function(t,n){i.outputViews[n.name]?(e.output_terminals[n.name].datatypes=n.extensions,e.output_terminals[n.name].destroyInvalidConnections()):i.addDataOutput(n)}),this.tool_state=t.tool_state,this.config_form=t.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=t.errors,this.annotation=t.annotation,this.label=t.label,"post_job_actions"in t){var r=t.post_job_actions;this.post_job_actions=r||{}}e.nodeView.renderToolErrors();var s=i.$("div.inputs"),l=i.newInputsDiv(),u={};n.each(t.data_inputs,function(t){var i=e.nodeView.addDataInput(t,l);u[t.name]=i}),n.each(n.difference(n.values(i.terminalViews),n.values(u)),function(t){t.el.terminal.destroy()}),i.terminalViews=u,e.nodeView.render(),1==t.data_outputs.length&&"collection_type"in t.data_outputs[0]&&i.updateDataOutput(t.data_outputs[0]),s.replaceWith(l),"workflow_outputs"in t&&(this.workflow_outputs=t.workflow_outputs?t.workflow_outputs:[]),this.markChanged(),this.redraw()},error:function(t){var e=o(this.element).find(".toolFormBody");e.find("div").remove();var i="<div style='color: red; text-style: italic;'>"+t+"</div>";this.config_form=i,e.html(i),this.app.workflow.node_changed(this)},markChanged:function(){this.app.workflow.node_changed(this)}});e.default=c}).call(e,i(1),i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(2),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(284),l=o(s),u=i(286),c=o(u);e.default=t.View.extend({initialize:function(t){this.node=t.node,this.output_width=Math.max(150,this.$el.width()),this.tool_body=this.$el.find(".toolFormBody"),this.tool_body.find("div").remove(),this.newInputsDiv().appendTo(this.tool_body),this.terminalViews={},this.outputViews={}},render:function(){this.renderToolLabel(),this.renderToolErrors(),this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolLabel:function(){this.$(".nodeTitle").text(this.node.label||this.node.name)},renderToolErrors:function(){this.node.errors?this.$el.addClass("tool-node-error"):this.$el.removeClass("tool-node-error")},newInputsDiv:function(){return n("<div/>").addClass("inputs")},updateMaxWidth:function(t){this.output_width=Math.max(this.output_width,t)},addRule:function(){this.tool_body.append(n("<div/>").addClass("rule"))},addDataInput:function(t,e){var i=!0;e||(e=this.$(".inputs"),i=!1);var n=this.terminalViews[t.name],o="dataset_collection"==t.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!n||n instanceof o||(n.el.terminal.destroy(),n=null),n){var a=n.el.terminal;a.update(t),a.destroyInvalidConnections()}else n=new o({node:this.node,input:t});this.terminalViews[t.name]=n;var r=n.el,s=new c.default.DataInputView({terminalElement:r,input:t,nodeView:this,skipResize:i}),u=s.$el;return e.append(u.prepend(n.terminalElements())),n},addDataOutput:function(t){var e=t.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,i=new e({node:this.node,output:t}),n=new c.default.DataOutputView({output:t,terminalElement:i.el,nodeView:this});this.outputViews[t.name]=n,this.tool_body.append(n.$el.append(i.terminalElements()))},redrawWorkflowOutputs:function(){r.each(this.outputViews,function(t){t.redrawWorkflowOutput()})},updateDataOutput:function(t){this.node.output_terminals[t.name].update(t)}})}).call(e,i(1),i(0))},function(t,e,i){"use strict";(function(t,n,o){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(285),s=a(r),l=i(223),u=a(l);window.workflow_globals=window.workflow_globals||{};var c=t.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(t){this.$el.tooltip({delay:500,title:"Run tool in parallel over 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e=t.node,i=t.input,n=i.name,o=this.terminalForInput(i);o.multiple||this.setupMappingView(o),this.el.terminal=o,o.node=e,o.name=n,e.input_terminals[n]=o},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(t,e){var i=this.el.terminal;return o(e.drag).hasClass("output-terminal")&&i.canAccept(e.drag.terminal)},onDropStart:function(t,e){e.proxy.terminal&&(e.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(t,e){e.proxy.terminal&&(e.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(t,e){var i=this.el.terminal;new u.default(e.drag.terminal,i).redraw()},onHover:function(){var t=this.el,e=t.terminal;if(e.connectors.length>0){var i=o("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(o("<div class='button'></div>").append(o("<div/>").addClass("fa-icon-button fa 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t=o(e.proxy).offsetParent().offset(),i=e.offsetX-t.left,n=e.offsetY-t.top;o(e.proxy).css({left:i,top:n}),e.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};i(),o("#canvas-container").get(0).scroll_panel.test(t,i)},onDragStart:function(t,e){o(e.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var i=o('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);i.terminal=new s.default.OutputTerminal({element:i});var n=new u.default;return n.dragging=!0,n.connect(this.el.terminal,i.terminal),i},onDragEnd:function(t,e){var i=e.proxy.terminal.connectors[0];i&&i.destroy(),o(e.proxy).remove(),o(e.available).removeClass("input-terminal-active"),o("#canvas-container").get(0).scroll_panel.stop()}}),g=v.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:c,terminalForOutput:function(t){var e=t.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:e})}}),_=v.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:c,terminalForOutput:function(t){var e=t.collection_type,i=t.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:e,collection_type_source:i,datatypes:t.extensions})}});e.default={InputTerminalView:p,OutputTerminalView:g,InputCollectionTerminalView:m,OutputCollectionTerminalView:_}}).call(e,i(1),i(2),i(0))},function(t,e,i){"use strict";(function(t,i,n){function o(t){this.collectionType=t,this.isCollection=!0,this.rank=t.split(":").length}Object.defineProperty(e,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(t){return!1},canMapOver:function(t){return!1},toString:function(){return"NullCollectionType[]"},append:function(t){return t},equal:function(t){return t===this}},r={isCollection:!0,canMatch:function(t){return a!==t},canMapOver:function(t){return!1},toString:function(){return"AnyCollectionType[]"},append:function(t){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(t){return t===this}};t.extend(o.prototype,{append:function(t){return t===a?this:t===r?otherCollectionType:new o(this.collectionType+":"+t.collectionType)},canMatch:function(t){return t!==a&&(t===r||t.collectionType==this.collectionType)},canMapOver:function(t){if(t===a)return!1;if(t===r)return!1;if(this.rank<=t.rank)return!1;var e=t.collectionType;return this._endsWith(this.collectionType,e)},effectiveMapOver:function(t){var e=t.collectionType;return new o(this.collectionType.substring(0,this.collectionType.length-e.length-1))},equal:function(t){return t.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(t,e){return-1!==t.indexOf(e,t.length-e.length)}});var s=i.Model.extend({initialize:function(t){this.mapOver=t.mapOver||a,this.terminal=t.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(t){this.mapOver=t,this.trigger("change")}}),l=i.Model.extend({initialize:function(t){this.element=t.element,this.connectors=[]},connect:function(t){this.connectors.push(t),this.node&&this.node.markChanged()},disconnect:function(e){this.connectors.splice(t.inArray(e,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){t.each(this.connectors,function(t,e){e.redraw()})},destroy:function(){t.each(this.connectors.slice(),function(t,e){e.destroy()})},destroyInvalidConnections:function(){n.each(this.connectors,function(t){t&&t.destroyIfInvalid()})},setMapOver:function(t){this.multiple||this.mapOver().equal(t)||(this.terminalMapping.setMapOver(t),n.each(this.node.output_terminals,function(e){e.setMapOver(t)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),u=l.extend({initialize:function(t){l.prototype.initialize.call(this,t),this.datatypes=t.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||n.each(this.node.mappedInputTerminals(),function(t){t.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),n.each(this.connectors,function(t){var e=t.handle2;e&&(e.resetMappingIfNeeded(),t.destroyIfInvalid())})}}),c=l.extend({initialize:function(t){l.prototype.initialize.call(this,t),this.update(t.input)},canAccept:function(t){return!this._inputFilled()&&this.attachable(t)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||n.each(this.node.output_terminals,function(t){t.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){var t;return this.connected()?this.multiple?this._collectionAttached()?inputsFilled=!0:t=!1:t=!0:t=!1,t},_collectionAttached:function(){if(this.connected()){var t=this.connectors[0].handle1;return!!t&&!!(t.isCollection||t.isMappedOver()||t.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var t=this.mapOver();if(t.isCollection)return[t];var e=[];return this.node.hasConnectedOutputTerminals()?e.push(n.first(n.values(this.node.output_terminals)).mapOver()):n.each(this.node.connectedMappedInputTerminals(),function(t){e.push(t.mapOver())}),e},_producesAcceptableDatatype:function(t){for(var e in this.datatypes){var i=this.datatypes[e];if("input"==i)return!0;var n=new Array;if(n=n.concat(t.datatypes),t.node.post_job_actions)for(var o in t.node.post_job_actions){var a=t.node.post_job_actions[o];"ChangeDatatypeAction"!=a.action_type||""!=a.output_name&&a.output_name!=t.name||!a.action_arguments||n.push(a.action_arguments.newtype)}for(var r in n){var s=n[r];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(n[r],i))return!0}}return!1},_otherCollectionType:function(t){var e=a;t.isCollection&&(e=t.collectionType);var i=t.mapOver();return i.isCollection&&(e=i.append(e)),e}}),d=c.extend({update:function(t){this.datatypes=t.extensions,this.multiple=t.multiple,this.collection=!1},connect:function(t){c.prototype.connect.call(this,t);var e=t.handle1;if(e){var i=this._otherCollectionType(e);i.isCollection&&this.setMapOver(i)}},attachable:function(t){var e=this._otherCollectionType(t),i=this.mapOver();if(e.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==e.rank&&this._producesAcceptableDatatype(t));if(i.isCollection&&i.canMatch(e))return this._producesAcceptableDatatype(t);return!!this._mappingConstraints().every(n.bind(e.canMatch,e))&&this._producesAcceptableDatatype(t)}return!i.isCollection&&this._producesAcceptableDatatype(t)}}),h=c.extend({update:function(t){this.multiple=!1,this.collection=!0,this.datatypes=t.extensions;var e=[];t.collection_types?n.each(t.collection_types,function(t){e.push(new o(t))}):e.push(r),this.collectionTypes=e},connect:function(t){c.prototype.connect.call(this,t);var e=t.handle1;if(e){var i=this._effectiveMapOver(e);this.setMapOver(i)}},_effectiveMapOver:function(t){var e=this.collectionTypes,i=this._otherCollectionType(t);if(!n.some(e,function(t){return t.canMatch(i)}))for(var o in e){var r=e[o];if(i.canMapOver(r)){var s=i.effectiveMapOver(r);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var t=this.mapOver();return n.map(this.collectionTypes,function(e){return t.append(e)})},attachable:function(t){var e=this._otherCollectionType(t);if(e.isCollection){var i=this._effectiveCollectionTypes(),o=this.mapOver();if(n.some(i,function(t){return t.canMatch(e)}))return this._producesAcceptableDatatype(t);if(o.isCollection)return!1;if(n.some(this.collectionTypes,function(t){return e.canMapOver(t)})){var a=this._effectiveMapOver(t);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(t)}}return!1}}),f=l.extend({initialize:function(t){if(l.prototype.initialize.call(this,t),this.datatypes=t.datatypes,t.collection_type)this.collectionType=new o(t.collection_type);else{t.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=r}this.isCollection=!0},update:function(t){var e;if(t.collection_type)e=new o(t.collection_type);else{t.collection_type_source||console.log("Warning: No collection type or collection type source defined."),e=r}e.collectionType!=this.collectionType.collectionType&&n.each(this.connectors,function(t){t.destroy()}),this.collectionType=e}});e.default={InputTerminal:d,OutputTerminal:u,InputCollectionTerminal:h,OutputCollectionTerminal:f,TerminalMapping:s,CollectionTypeDescription:o,NULL_COLLECTION_TYPE_DESCRIPTION:a,ANY_COLLECTION_TYPE_DESCRIPTION:r}}).call(e,i(0),i(1),i(2))},function(t,e,i){"use strict";(function(t,i){Object.defineProperty(e,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var n=t.View.extend({className:"form-row dataRow input-data-row",initialize:function(t){this.input=t.input,this.nodeView=t.nodeView,this.terminalElement=t.terminalElement,this.$el.attr("name",this.input.name).html(this.input.label),t.skipResize||(this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),i("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()),this.$el.css({position:"",left:"",top:"",display:""}),this.$el.remove())}}),o=t.View.extend({className:"form-row dataRow",initialize:function(t){this.output=t.output,this.terminalElement=t.terminalElement,this.nodeView=t.nodeView;var e=this.output,n=e.name,o=this.nodeView.node;if(e.extensions.indexOf("input")>=0||e.extensions.indexOf("input_collection")>=0||(n=n+" ("+e.extensions.join(", ")+")"),this.$el.html(n),this.calloutView=null,["tool","subworkflow"].indexOf(o.type)>=0){var r=new a({label:n,output:e,node:o});this.calloutView=r,this.$el.append(r.el),this.$el.hover(function(){r.hoverImage()},function(){r.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),i("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=t.View.extend({tagName:"div",initialize:function(t){this.label=t.label,this.node=t.node,this.output=t.output;var e=this,n=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(i("<div class='buttons'></div>").append(i("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var t=e.output.name;n.isWorkflowOutput(t)?(n.removeWorkflowOutput(t),e.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")):(n.addWorkflowOutput(t),e.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png")),window.workflow_globals.workflow.has_changes=!0,window.workflow_globals.canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."}),this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8}),this.$el.show(),this.resetImage()},resetImage:function(){this.node.isWorkflowOutput(this.output.name)?this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"):this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")},hoverImage:function(){this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-yellow.png")}});e.default={DataInputView:n,DataOutputView:o}}).call(e,i(1),i(0))},function(t,e,i){"use strict";(function(t,n){function o(t){return t&&t.__esModule?t:{default:t}}function a(t){var e=t.model.attributes,i=e.workflow,n=e.node;e.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:n.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),e.inputs.unshift({type:"text",name:"__label",label:"Label",value:n.label,help:"Add a step label.",fixed:!0,onchange:function(e){var o=!1;for(var a in i.nodes){var r=i.nodes[a];if(r.label&&r.label==e&&r.id!=n.id){o=!0;break}}var s=t.data.match("__label");t.element_list[s].model.set("error_text",o&&"Duplicate label. Please fix this before saving the workflow."),t.trigger("change")}})}function r(t,e,i,n){var o=n.node.post_job_actions;e=e||[],e.push(t);for(var a in t.inputs){var s=t.inputs[a];if(s.action){if(s.name="pja__"+i+"__"+s.action,s.pja_arg&&(s.name+="__"+s.pja_arg),s.payload)for(var l in s.payload)s.payload[s.name+"__"+l]=s.payload[l],delete s.payload[l];var u=o[s.action+i];if(u){for(var c in e)e[c].expanded=!0;s.pja_arg?s.value=u.action_arguments&&u.action_arguments[s.pja_arg]||s.value:s.value="true"}}s.inputs&&r(s,e.slice(0),i,n)}}function s(t,e){var i=[],n=[],o=e.datatypes,a=e.node,s=e.workflow;for(var l in o)i.push({0:o[l],1:o[l]});for(l in a.input_terminals)n.push(a.input_terminals[l].name);i.sort(function(t,e){return t.label>e.label?1:t.label<e.label?-1:0}),i.unshift({0:"Sequences",1:"Sequences"}),i.unshift({0:"Roadmaps",1:"Roadmaps"}),i.unshift({0:"Leave unchanged",1:"__empty__"});var u,c={title:"Configure Output: '"+t+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(u=a.getWorkflowOutput(t))&&u.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(e){s.attemptUpdateOutputLabel(a,t,e)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. 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d=t("#canvas-container").position(),h=t("#canvas-container").parent(),f=a.width(),p=a.height();return a.css({left:-d.left+h.width()/2-f/2,top:-d.top+h.height()/2-p/2}),c.prependTo(a.find(".toolFormTitle")),f+=c.width()+10,a.css("width",f),a.bind("dragstart",function(){o.workflow.activate_node(l)}).bind("dragend",function(){o.workflow.node_changed(this),o.workflow.fit_canvas_to_nodes(),o.canvas_manager.draw_overview()}).bind("dragclickonly",function(){o.workflow.activate_node(l)}).bind("drag",function(e,i){var n=t(this).offsetParent().offset(),o=i.offsetX-n.left,a=i.offsetY-n.top;t(this).css({left:o,top:a}),t(this).find(".terminal").each(function(){this.terminal.redraw()})}),l}})}).call(e,i(0),i(1),i(2))},function(t,e,i){"use strict";(function(t){function n(t,e){this.app=t,this.canvas_container=e,this.id_counter=0,this.nodes={},this.name=null,this.has_changes=!1,this.active_form_has_changes=!1,this.workflowOutputLabels={}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(223),a=function(t){return t&&t.__esModule?t:{default:t}}(o),r=i(42),s=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r);t.extend(n.prototype,{canLabelOutputWith:function(t){return!t||!(t in this.workflowOutputLabels)},registerOutputLabel:function(t){t&&(this.workflowOutputLabels[t]=!0)},unregisterOutputLabel:function(t){t&&delete this.workflowOutputLabels[t]},updateOutputLabel:function(t,e){t&&this.unregisterOutputLabel(t),this.canLabelOutputWith(e)||s.warning("Workflow contains duplicate workflow output labels "+e+". This must be fixed before it can be saved."),e&&this.registerOutputLabel(e)},attemptUpdateOutputLabel:function(t,e,i){return!!this.canLabelOutputWith(i)&&(t.labelWorkflowOutput(e,i),t.nodeView.redrawWorkflowOutputs(),!0)},create_node:function(t,e,i){var n=this.app.prebuildNode(t,e,i);return this.add_node(n),this.fit_canvas_to_nodes(),this.app.canvas_manager.draw_overview(),this.activate_node(n),n},add_node:function(t){t.id=this.id_counter,t.element.attr("id","wf-node-step-"+t.id),this.id_counter++,this.nodes[t.id]=t,this.has_changes=!0,t.workflow=this},remove_node:function(t){this.active_node==t&&this.clear_active_node(),delete this.nodes[t.id],this.has_changes=!0},remove_all:function(){var e=this;t.each(this.nodes,function(t,i){i.destroy(),e.remove_node(i)})},rectify_workflow_outputs:function(){var e=!1,i=!1;if(t.each(this.nodes,function(n,o){o.workflow_outputs&&o.workflow_outputs.length>0&&(e=!0),t.each(o.post_job_actions,function(t,e){"HideDatasetAction"===e.action_type&&(i=!0)})}),!1!==e||!1!==i){var n=this;t.each(this.nodes,function(i,o){if("tool"===o.type){var a=!1;null===o.post_job_actions&&(o.post_job_actions={},a=!0);var r=[];t.each(o.post_job_actions,function(t,e){"HideDatasetAction"==e.action_type&&r.push(t)}),r.length>0&&t.each(r,function(t,e){a=!0,delete o.post_job_actions[e]}),e&&t.each(o.output_terminals,function(t,e){if(!0==!o.isWorkflowOutput(e.name)){a=!0;var i={action_type:"HideDatasetAction",output_name:e.name,action_arguments:{}};o.post_job_actions["HideDatasetAction"+e.name]=null,o.post_job_actions["HideDatasetAction"+e.name]=i}}),n.active_node==o&&!0===a&&n.reload_active_node()}})}},to_simple:function(){var e={};return t.each(this.nodes,function(i,n){var o={};t.each(n.input_terminals,function(e,i){o[i.name]=null;var n=[];t.each(i.connectors,function(t,e){if(e.handle1){var a={id:e.handle1.node.id,output_name:e.handle1.name},r=i.attributes.input.input_subworkflow_step_id;void 0!==r&&(a.input_subworkflow_step_id=r),n[t]=a,o[i.name]=n}})});var a={};n.post_job_actions&&t.each(n.post_job_actions,function(t,e){var i={action_type:e.action_type,output_name:e.output_name,action_arguments:e.action_arguments};a[e.action_type+e.output_name]=null,a[e.action_type+e.output_name]=i}),n.workflow_outputs||(n.workflow_outputs=[]);var r={id:n.id,type:n.type,content_id:n.content_id,tool_version:n.config_form.version,tool_state:n.tool_state,errors:n.errors,input_connections:o,position:t(n.element).position(),annotation:n.annotation,post_job_actions:n.post_job_actions,uuid:n.uuid,label:n.label,workflow_outputs:n.workflow_outputs};e[n.id]=r}),{steps:e}},from_simple:function(e,i){var n=void 0===i||i,o=this,r=0;n?o.name=e.name:r=Object.keys(o.nodes).length;var s=r,l=!1;t.each(e.steps,function(e,i){var a=o.app.prebuildNode(i.type,i.name,i.content_id);n||(i.uuid=null,t.each(i.workflow_outputs,function(t,e){e.uuid=null})),a.init_field_data(i),i.position&&a.element.css({top:i.position.top,left:i.position.left}),a.id=parseInt(i.id)+r,o.nodes[a.id]=a,s=Math.max(s,parseInt(e)+r),l||(a.workflow_outputs.length>0?l=!0:t.each(a.post_job_actions||[],function(t,e){"HideDatasetAction"===e.action_type&&(l=!0)}))}),o.id_counter=s+1,t.each(e.steps,function(e,i){var n=o.nodes[parseInt(e)+r];t.each(i.input_connections,function(e,i){i&&(t.isArray(i)||(i=[i]),t.each(i,function(t,i){var s=o.nodes[parseInt(i.id)+r],l=new a.default;l.connect(s.output_terminals[i.output_name],n.input_terminals[e]),l.redraw()}))}),l&&t.each(n.output_terminals,function(e,i){if(void 0===n.post_job_actions["HideDatasetAction"+i.name]){n.addWorkflowOutput(i.name);t(n.element).find(".callout."+i.name).find("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"),o.has_changes=!0}})})},check_changes_in_active_form:function(){this.active_form_has_changes&&(this.has_changes=!0,t("#right-content").find("form").submit(),this.active_form_has_changes=!1)},reload_active_node:function(){if(this.active_node){var t=this.active_node;this.clear_active_node(),this.activate_node(t)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),this.app.showAttributes()},activate_node:function(t){this.active_node!=t&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(t.config_form,t),t.make_active(),this.active_node=t)},node_changed:function(t,e){this.has_changes=!0,this.active_node==t&&e&&(this.check_changes_in_active_form(),this.app.showForm(t.config_form,t)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var e={},i={};t.each(this.nodes,function(t,n){void 0===e[t]&&(e[t]=0),void 0===i[t]&&(i[t]=[])}),t.each(this.nodes,function(n,o){t.each(o.input_terminals,function(n,a){t.each(a.connectors,function(t,n){var a=n.handle1.node;e[o.id]+=1,i[a.id].push(o.id)})})});for(var n=[];;){var o=[];for(var a in e)0===e[a]&&o.push(a);if(0===o.length)break;n.push(o);for(var r in o){var s=o[r];delete e[s];for(var l in i[s])e[i[s][l]]-=1}}if(!e.length){var u=this.nodes,c=80;t.each(n,function(e,i){i.sort(function(e,i){return t(u[e].element).position().top-t(u[i].element).position().top});var n=0,o=30;t.each(i,function(e,i){var a=u[i],r=t(a.element);t(r).css({top:o,left:c}),n=Math.max(n,t(r).width()),o+=t(r).height()+30}),c+=n+80}),t.each(u,function(t,e){e.redraw()})}},bounds_for_all_nodes:function(){var e,i=1/0,n=-1/0,o=1/0,a=-1/0;return t.each(this.nodes,function(r,s){var l=t(s.element);e=l.position(),i=Math.min(i,e.left),n=Math.max(n,e.left+l.width()),o=Math.min(o,e.top),a=Math.max(a,e.top+l.width())}),{xmin:i,xmax:n,ymin:o,ymax:a}},fit_canvas_to_nodes:function(){function e(t,e){return Math.ceil(t/e)*e}function i(t,e){if(t<e||t>3*e){return-(t-(Math.ceil(t%e/e)+1)*e)}return 0}var n=this.bounds_for_all_nodes(),o=this.canvas_container.position(),a=this.canvas_container.parent(),r=i(n.xmin,100),s=i(n.ymin,100);r=Math.max(r,o.left),s=Math.max(s,o.top);var l=o.left-r,u=o.top-s,c=e(n.xmax+100,100)+r,d=e(n.ymax+100,100)+s;c=Math.max(c,-l+a.width()),d=Math.max(d,-u+a.height()),this.canvas_container.css({left:l,top:u,width:c,height:d}),this.canvas_container.children().each(function(){var e=t(this).position();t(this).css("left",e.left+r),t(this).css("top",e.top+s)})}}),e.default=n}).call(e,i(0))},function(t,e,i){"use strict";(function(t){function i(t,e,i){this.app=t,this.cv=e,this.cc=this.cv.find("#canvas-container"),this.overview=i,this.oc=i.find("#overview-canvas"),this.ov=i.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function n(t){this.panel=t}Object.defineProperty(e,"__esModule",{value:!0}),t.extend(i.prototype,{init_drag:function(){var e=this,i=function(t,i){t=Math.min(t,e.cv.width()/2),t=Math.max(t,-e.cc.width()+e.cv.width()/2),i=Math.min(i,e.cv.height()/2),i=Math.max(i,-e.cc.height()+e.cv.height()/2),e.cc.css({left:t,top:i}),e.cv.css({"background-position-x":t,"background-position-y":i}),e.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new n(this)});var o,a;this.cv.bind("dragstart",function(){var i=t(this).offset(),n=e.cc.position();a=n.top-i.top,o=n.left-i.left}).bind("drag",function(t,e){i(e.offsetX+o,e.offsetY+a)}).bind("dragend",function(){e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}),this.overview.click(function(t){if(e.overview.hasClass("blockaclick"))e.overview.removeClass("blockaclick");else{var n=e.cc.width(),o=e.cc.height(),a=e.oc.width(),r=e.oc.height(),s=t.pageX-e.oc.offset().left-e.ov.width()/2,l=t.pageY-e.oc.offset().top-e.ov.height()/2;i(-s/a*n,-l/r*o),e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}}),this.ov.bind("drag",function(t,n){var o=e.cc.width(),a=e.cc.height(),r=e.oc.width(),s=e.oc.height(),l=n.offsetX-e.overview.offset().left,u=n.offsetY-e.overview.offset().top;i(-l/r*o,-u/s*a)}).bind("dragend",function(){e.overview.addClass("blockaclick"),e.app.workflow.fit_canvas_to_nodes(),e.draw_overview()}),t("#overview-border").bind("drag",function(i,n){var o=t(this).offsetParent(),a=o.offset(),r=Math.max(o.width()-(n.offsetX-a.left),o.height()-(n.offsetY-a.top));t(this).css({width:r,height:r}),e.draw_overview()}),t("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var t=this;document.addEventListener("copy",function(e){t.app.workflow.active_node&&e.clipboardData.setData("application/json",JSON.stringify({nodeId:t.app.workflow.active_node.id})),e.preventDefault()}),document.addEventListener("paste",function(e){var i;try{i=JSON.parse(e.clipboardData.getData("application/json")).nodeId}catch(t){}i&&t.app.workflow.nodes.hasOwnProperty(i)&&t.app.workflow.nodes[i].clone(),e.preventDefault()})},update_viewport_overlay:function(){var t=this.cc,e=this.cv,i=this.oc,n=this.ov,o=t.width(),a=t.height(),r=i.width(),s=i.height(),l=t.position();n.css({left:-l.left/o*r,top:-l.top/a*s,width:e.width()/o*r-2,height:e.height()/a*s-2})},draw_overview:function(){var e,i,n,o,a=t("#overview-canvas"),r=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=t("#canvas-container").width(),u=t("#canvas-container").height(),c=this.cv.width(),d=this.cv.height();l<c&&u<d?(n=l/c*r,o=(r-n)/2,e=u/d*r,i=(r-e)/2):l<u?(i=0,e=r,n=Math.ceil(e*l/u),o=(r-n)/2):(n=r,o=0,e=Math.ceil(n*u/l),i=(r-e)/2),a.parent().css({left:o,top:i,width:n,height:e}),a.attr("width",n),a.attr("height",e),t.each(this.app.workflow.nodes,function(i,o){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=t(o.element),r=a.position(),c=r.left/l*n,d=r.top/u*e,h=a.width()/l*n,f=a.height()/u*e;o.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==o.workflow_outputs&&o.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(c,d,h,f),s.strokeRect(c,d,h,f)}),this.update_viewport_overlay()}}),t.extend(n.prototype,{test:function(e,i){clearTimeout(this.timeout);var n=e.pageX,o=e.pageY,a=t(this.panel),r=a.position(),s=a.width(),l=a.height(),u=a.parent(),c=u.width(),d=u.height(),h=u.offset(),f=h.left,p=h.top,m=f+u.width(),v=p+u.height(),g=-(s-c/2),_=-(l-d/2),w=c/2,b=d/2,y=!1;if(n-5<f){if(r.left<w){var x=Math.min(23,w-r.left);a.css("left",r.left+x),y=!0}}else if(n+5>m){if(r.left>g){var x=Math.min(23,r.left-g);a.css("left",r.left-x),y=!0}}else if(o-5<p){if(r.top<b){var x=Math.min(23,b-r.top);a.css("top",r.top+x),y=!0}}else if(o+5>v&&r.top>_){var x=Math.min(23,r.top-g);a.css("top",r.top-x+"px"),y=!0}if(y){i();var a=this;this.timeout=setTimeout(function(){a.test(e,i)},50)}},stop:function(t,e){clearTimeout(this.timeout)}}),e.default=i}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,o){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),s=a(r),l=i(283),u=a(l),c=t.Model.extend({initialize:function(t,e){this.app=t,this.element=e.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(t){return n.findWhere(this.workflow_outputs,{output_name:t})},isWorkflowOutput:function(t){return void 0!==this.getWorkflowOutput(t)},removeWorkflowOutput:function(t){for(;this.isWorkflowOutput(t);)this.workflow_outputs.splice(this.getWorkflowOutput(t),1)},addWorkflowOutput:function(t,e){if(!this.isWorkflowOutput(t)){var i={output_name:t};return e&&(i.label=e),this.workflow_outputs.push(i),!0}return!1},labelWorkflowOutput:function(t,e){var i=!1,n=null;if(this.isWorkflowOutput(t)){var o=this.getWorkflowOutput(t);n=o.label,o.label=e,i=n!=e}else i=this.addWorkflowOutput(t,e);return i&&(this.app.workflow.updateOutputLabel(n,e),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),i},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.connectors.length>0&&e.push(i)}),e},hasConnectedOutputTerminals:function(){var t=this.output_terminals;for(var e in t)if(t[e].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var t=this.input_terminals;for(var e in t){var i=t[e];if(i.connectors.length>0&&i.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.mapOver().isCollection&&i.connectors.length>0&&e.push(i)}),e},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(t){var e=[];return o.each(t,function(t,i){i.mapOver().isCollection&&e.push(i)}),e},hasMappedOverInputTerminals:function(){var t=!1;return n.each(this.input_terminals,function(e){e.mapOver().isCollection&&(t=!0)}),t},redraw:function(){o.each(this.input_terminals,function(t,e){e.redraw()}),o.each(this.output_terminals,function(t,e){e.redraw()})},clone:function(){var t=this,e={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},i=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(n){var o=Object.assign({},n,e);i.init_field_data(o),i.update_field_data(o),t.app.workflow.activate_node(i)}})},destroy:function(){o.each(this.input_terminals,function(t,e){e.destroy()}),o.each(this.output_terminals,function(t,e){e.destroy()}),this.app.workflow.remove_node(this),o(this.element).remove()},make_active:function(){o(this.element).addClass("toolForm-active")},make_inactive:function(){var t=this.element.get(0);!function(e){e.removeChild(t),e.appendChild(t)}(t.parentNode),o(t).removeClass("toolForm-active")},init_field_data:function(t){t.type&&(this.type=t.type),this.name=t.name,this.config_form=t.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=t.tool_state,this.errors=t.errors,this.tooltip=t.tooltip?t.tooltip:"",this.annotation=t.annotation,this.post_job_actions=t.post_job_actions?t.post_job_actions:{},this.label=t.label,this.uuid=t.uuid,this.workflow_outputs=t.workflow_outputs?t.workflow_outputs:[];var e=this,i=new u.default({el:this.element[0],node:e});e.nodeView=i,o.each(t.data_inputs,function(t,e){i.addDataInput(e)}),t.data_inputs.length>0&&t.data_outputs.length>0&&i.addRule(),o.each(t.data_outputs,function(t,e){i.addDataOutput(e)}),i.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(t){var e=this,i=e.nodeView,a=[];if(o.each(i.outputViews,function(e,i){var o=i.output.name,r=t.data_outputs,s=!1;n.each(r,function(t){t.name==o&&(s=!0)}),!1===s&&a.push(o)}),n.each(a,function(t){n.each(i.outputViews[t].terminalElement.terminal.connectors,function(t){t&&t.destroy()}),i.outputViews[t].remove(),delete i.outputViews[t],delete e.output_terminals[t]}),o.each(e.workflow_outputs,function(t,i){i&&!e.output_terminals[i.output_name]&&e.workflow_outputs.splice(t,1)}),o.each(t.data_outputs,function(t,n){i.outputViews[n.name]?(e.output_terminals[n.name].datatypes=n.extensions,e.output_terminals[n.name].destroyInvalidConnections()):i.addDataOutput(n)}),this.tool_state=t.tool_state,this.config_form=t.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=t.errors,this.annotation=t.annotation,this.label=t.label,"post_job_actions"in t){var r=t.post_job_actions;this.post_job_actions=r||{}}e.nodeView.renderToolErrors();var s=i.$("div.inputs"),l=i.newInputsDiv(),u={};n.each(t.data_inputs,function(t){var i=e.nodeView.addDataInput(t,l);u[t.name]=i}),n.each(n.difference(n.values(i.terminalViews),n.values(u)),function(t){t.el.terminal.destroy()}),i.terminalViews=u,e.nodeView.render(),1==t.data_outputs.length&&"collection_type"in t.data_outputs[0]&&i.updateDataOutput(t.data_outputs[0]),s.replaceWith(l),"workflow_outputs"in t&&(this.workflow_outputs=t.workflow_outputs?t.workflow_outputs:[]),this.markChanged(),this.redraw()},error:function(t){var e=o(this.element).find(".toolFormBody");e.find("div").remove();var i="<div style='color: red; text-style: italic;'>"+t+"</div>";this.config_form=i,e.html(i),this.app.workflow.node_changed(this)},markChanged:function(){this.app.workflow.node_changed(this)}});e.default=c}).call(e,i(1),i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(2),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(284),l=o(s),u=i(286),c=o(u);e.default=t.View.extend({initialize:function(t){this.node=t.node,this.output_width=Math.max(150,this.$el.width()),this.tool_body=this.$el.find(".toolFormBody"),this.tool_body.find("div").remove(),this.newInputsDiv().appendTo(this.tool_body),this.terminalViews={},this.outputViews={}},render:function(){this.renderToolLabel(),this.renderToolErrors(),this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolLabel:function(){this.$(".nodeTitle").text(this.node.label||this.node.name)},renderToolErrors:function(){this.node.errors?this.$el.addClass("tool-node-error"):this.$el.removeClass("tool-node-error")},newInputsDiv:function(){return n("<div/>").addClass("inputs")},updateMaxWidth:function(t){this.output_width=Math.max(this.output_width,t)},addRule:function(){this.tool_body.append(n("<div/>").addClass("rule"))},addDataInput:function(t,e){var i=!0;e||(e=this.$(".inputs"),i=!1);var n=this.terminalViews[t.name],o="dataset_collection"==t.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!n||n instanceof o||(n.el.terminal.destroy(),n=null),n){var a=n.el.terminal;a.update(t),a.destroyInvalidConnections()}else n=new o({node:this.node,input:t});this.terminalViews[t.name]=n;var r=n.el,s=new c.default.DataInputView({terminalElement:r,input:t,nodeView:this,skipResize:i}),u=s.$el;return e.append(u.prepend(n.terminalElements())),n},addDataOutput:function(t){var e=t.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,i=new e({node:this.node,output:t}),n=new c.default.DataOutputView({output:t,terminalElement:i.el,nodeView:this});this.outputViews[t.name]=n,this.tool_body.append(n.$el.append(i.terminalElements()))},redrawWorkflowOutputs:function(){r.each(this.outputViews,function(t){t.redrawWorkflowOutput()})},updateDataOutput:function(t){this.node.output_terminals[t.name].update(t)}})}).call(e,i(1),i(0))},function(t,e,i){"use strict";(function(t,n,o){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(285),s=a(r),l=i(223),u=a(l);window.workflow_globals=window.workflow_globals||{};var c=t.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(t){this.$el.tooltip({delay:500,title:"Run tool in parallel over 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e=t.node,i=t.input,n=i.name,o=this.terminalForInput(i);o.multiple||this.setupMappingView(o),this.el.terminal=o,o.node=e,o.name=n,e.input_terminals[n]=o},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(t,e){var i=this.el.terminal;return o(e.drag).hasClass("output-terminal")&&i.canAccept(e.drag.terminal)},onDropStart:function(t,e){e.proxy.terminal&&(e.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(t,e){e.proxy.terminal&&(e.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(t,e){var i=this.el.terminal;new u.default(e.drag.terminal,i).redraw()},onHover:function(){var t=this.el,e=t.terminal;if(e.connectors.length>0){var i=o("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(o("<div class='button'></div>").append(o("<div/>").addClass("fa-icon-button fa 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t=o(e.proxy).offsetParent().offset(),i=e.offsetX-t.left,n=e.offsetY-t.top;o(e.proxy).css({left:i,top:n}),e.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};i(),o("#canvas-container").get(0).scroll_panel.test(t,i)},onDragStart:function(t,e){o(e.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var i=o('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);i.terminal=new s.default.OutputTerminal({element:i});var n=new u.default;return n.dragging=!0,n.connect(this.el.terminal,i.terminal),i},onDragEnd:function(t,e){var i=e.proxy.terminal.connectors[0];i&&i.destroy(),o(e.proxy).remove(),o(e.available).removeClass("input-terminal-active"),o("#canvas-container").get(0).scroll_panel.stop()}}),g=v.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:c,terminalForOutput:function(t){var e=t.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:e})}}),_=v.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:c,terminalForOutput:function(t){var e=t.collection_type,i=t.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:e,collection_type_source:i,datatypes:t.extensions})}});e.default={InputTerminalView:p,OutputTerminalView:g,InputCollectionTerminalView:m,OutputCollectionTerminalView:_}}).call(e,i(1),i(2),i(0))},function(t,e,i){"use strict";(function(t,i,n){function o(t){this.collectionType=t,this.isCollection=!0,this.rank=t.split(":").length}Object.defineProperty(e,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(t){return!1},canMapOver:function(t){return!1},toString:function(){return"NullCollectionType[]"},append:function(t){return t},equal:function(t){return t===this}},r={isCollection:!0,canMatch:function(t){return a!==t},canMapOver:function(t){return!1},toString:function(){return"AnyCollectionType[]"},append:function(t){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(t){return t===this}};t.extend(o.prototype,{append:function(t){return t===a?this:t===r?otherCollectionType:new o(this.collectionType+":"+t.collectionType)},canMatch:function(t){return t!==a&&(t===r||t.collectionType==this.collectionType)},canMapOver:function(t){if(t===a)return!1;if(t===r)return!1;if(this.rank<=t.rank)return!1;var e=t.collectionType;return this._endsWith(this.collectionType,e)},effectiveMapOver:function(t){var e=t.collectionType;return new o(this.collectionType.substring(0,this.collectionType.length-e.length-1))},equal:function(t){return t.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(t,e){return-1!==t.indexOf(e,t.length-e.length)}});var s=i.Model.extend({initialize:function(t){this.mapOver=t.mapOver||a,this.terminal=t.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(t){this.mapOver=t,this.trigger("change")}}),l=i.Model.extend({initialize:function(t){this.element=t.element,this.connectors=[]},connect:function(t){this.connectors.push(t),this.node&&this.node.markChanged()},disconnect:function(e){this.connectors.splice(t.inArray(e,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){t.each(this.connectors,function(t,e){e.redraw()})},destroy:function(){t.each(this.connectors.slice(),function(t,e){e.destroy()})},destroyInvalidConnections:function(){n.each(this.connectors,function(t){t&&t.destroyIfInvalid()})},setMapOver:function(t){this.multiple||this.mapOver().equal(t)||(this.terminalMapping.setMapOver(t),n.each(this.node.output_terminals,function(e){e.setMapOver(t)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),u=l.extend({initialize:function(t){l.prototype.initialize.call(this,t),this.datatypes=t.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||n.each(this.node.mappedInputTerminals(),function(t){t.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),n.each(this.connectors,function(t){var e=t.handle2;e&&(e.resetMappingIfNeeded(),t.destroyIfInvalid())})}}),c=l.extend({initialize:function(t){l.prototype.initialize.call(this,t),this.update(t.input)},canAccept:function(t){return!this._inputFilled()&&this.attachable(t)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||n.each(this.node.output_terminals,function(t){t.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){var t;return this.connected()?this.multiple?this._collectionAttached()?inputsFilled=!0:t=!1:t=!0:t=!1,t},_collectionAttached:function(){if(this.connected()){var t=this.connectors[0].handle1;return!!t&&!!(t.isCollection||t.isMappedOver()||t.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var t=this.mapOver();if(t.isCollection)return[t];var e=[];return this.node.hasConnectedOutputTerminals()?e.push(n.first(n.values(this.node.output_terminals)).mapOver()):n.each(this.node.connectedMappedInputTerminals(),function(t){e.push(t.mapOver())}),e},_producesAcceptableDatatype:function(t){for(var e in this.datatypes){var i=this.datatypes[e];if("input"==i)return!0;var n=new Array;if(n=n.concat(t.datatypes),t.node.post_job_actions)for(var o in t.node.post_job_actions){var a=t.node.post_job_actions[o];"ChangeDatatypeAction"!=a.action_type||""!=a.output_name&&a.output_name!=t.name||!a.action_arguments||n.push(a.action_arguments.newtype)}for(var r in n){var s=n[r];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(n[r],i))return!0}}return!1},_otherCollectionType:function(t){var e=a;t.isCollection&&(e=t.collectionType);var i=t.mapOver();return i.isCollection&&(e=i.append(e)),e}}),d=c.extend({update:function(t){this.datatypes=t.extensions,this.multiple=t.multiple,this.collection=!1},connect:function(t){c.prototype.connect.call(this,t);var e=t.handle1;if(e){var i=this._otherCollectionType(e);i.isCollection&&this.setMapOver(i)}},attachable:function(t){var e=this._otherCollectionType(t),i=this.mapOver();if(e.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==e.rank&&this._producesAcceptableDatatype(t));if(i.isCollection&&i.canMatch(e))return this._producesAcceptableDatatype(t);return!!this._mappingConstraints().every(n.bind(e.canMatch,e))&&this._producesAcceptableDatatype(t)}return!i.isCollection&&this._producesAcceptableDatatype(t)}}),h=c.extend({update:function(t){this.multiple=!1,this.collection=!0,this.datatypes=t.extensions;var e=[];t.collection_types?n.each(t.collection_types,function(t){e.push(new o(t))}):e.push(r),this.collectionTypes=e},connect:function(t){c.prototype.connect.call(this,t);var e=t.handle1;if(e){var i=this._effectiveMapOver(e);this.setMapOver(i)}},_effectiveMapOver:function(t){var e=this.collectionTypes,i=this._otherCollectionType(t);if(!n.some(e,function(t){return t.canMatch(i)}))for(var o in e){var r=e[o];if(i.canMapOver(r)){var s=i.effectiveMapOver(r);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var t=this.mapOver();return n.map(this.collectionTypes,function(e){return t.append(e)})},attachable:function(t){var e=this._otherCollectionType(t);if(e.isCollection){var i=this._effectiveCollectionTypes(),o=this.mapOver();if(n.some(i,function(t){return t.canMatch(e)}))return this._producesAcceptableDatatype(t);if(o.isCollection)return!1;if(n.some(this.collectionTypes,function(t){return e.canMapOver(t)})){var a=this._effectiveMapOver(t);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(t)}}return!1}}),f=l.extend({initialize:function(t){if(l.prototype.initialize.call(this,t),this.datatypes=t.datatypes,t.collection_type)this.collectionType=new o(t.collection_type);else{t.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=r}this.isCollection=!0},update:function(t){var e;if(t.collection_type)e=new o(t.collection_type);else{t.collection_type_source||console.log("Warning: No collection type or collection type source defined."),e=r}e.collectionType!=this.collectionType.collectionType&&n.each(this.connectors,function(t){t.destroy()}),this.collectionType=e}});e.default={InputTerminal:d,OutputTerminal:u,InputCollectionTerminal:h,OutputCollectionTerminal:f,TerminalMapping:s,CollectionTypeDescription:o,NULL_COLLECTION_TYPE_DESCRIPTION:a,ANY_COLLECTION_TYPE_DESCRIPTION:r}}).call(e,i(0),i(1),i(2))},function(t,e,i){"use strict";(function(t,i){Object.defineProperty(e,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var n=t.View.extend({className:"form-row dataRow input-data-row",initialize:function(t){this.input=t.input,this.nodeView=t.nodeView,this.terminalElement=t.terminalElement,this.$el.attr("name",this.input.name).html(this.input.label),t.skipResize||(this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),i("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()),this.$el.css({position:"",left:"",top:"",display:""}),this.$el.remove())}}),o=t.View.extend({className:"form-row dataRow",initialize:function(t){this.output=t.output,this.terminalElement=t.terminalElement,this.nodeView=t.nodeView;var e=this.output,n=e.name,o=this.nodeView.node;if(e.extensions.indexOf("input")>=0||e.extensions.indexOf("input_collection")>=0||(n=n+" ("+e.extensions.join(", ")+")"),this.$el.html(n),this.calloutView=null,["tool","subworkflow"].indexOf(o.type)>=0){var r=new a({label:n,output:e,node:o});this.calloutView=r,this.$el.append(r.el),this.$el.hover(function(){r.hoverImage()},function(){r.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),i("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=t.View.extend({tagName:"div",initialize:function(t){this.label=t.label,this.node=t.node,this.output=t.output;var e=this,n=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(i("<div class='buttons'></div>").append(i("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var t=e.output.name;n.isWorkflowOutput(t)?(n.removeWorkflowOutput(t),e.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")):(n.addWorkflowOutput(t),e.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png")),window.workflow_globals.workflow.has_changes=!0,window.workflow_globals.canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."}),this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8}),this.$el.show(),this.resetImage()},resetImage:function(){this.node.isWorkflowOutput(this.output.name)?this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"):this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")},hoverImage:function(){this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-yellow.png")}});e.default={DataInputView:n,DataOutputView:o}}).call(e,i(1),i(0))},function(t,e,i){"use strict";(function(t,n){function o(t){return t&&t.__esModule?t:{default:t}}function a(t){var e=t.model.attributes,i=e.workflow,n=e.node;e.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:n.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),e.inputs.unshift({type:"text",name:"__label",label:"Label",value:n.label,help:"Add a step label.",fixed:!0,onchange:function(e){var o=!1;for(var a in i.nodes){var r=i.nodes[a];if(r.label&&r.label==e&&r.id!=n.id){o=!0;break}}var s=t.data.match("__label");t.element_list[s].model.set("error_text",o&&"Duplicate label. Please fix this before saving the workflow."),t.trigger("change")}})}function r(t,e,i,n){var o=n.node.post_job_actions;e=e||[],e.push(t);for(var a in t.inputs){var s=t.inputs[a];if(s.action){if(s.name="pja__"+i+"__"+s.action,s.pja_arg&&(s.name+="__"+s.pja_arg),s.payload)for(var l in s.payload)s.payload[s.name+"__"+l]=s.payload[l],delete s.payload[l];var u=o[s.action+i];if(u){for(var c in e)e[c].expanded=!0;s.pja_arg?s.value=u.action_arguments&&u.action_arguments[s.pja_arg]||s.value:s.value="true"}}s.inputs&&r(s,e.slice(0),i,n)}}function s(t,e){var i=[],n=[],o=e.datatypes,a=e.node,s=e.workflow;for(var l in o)i.push({0:o[l],1:o[l]});for(l in a.input_terminals)n.push(a.input_terminals[l].name);i.sort(function(t,e){return t.label>e.label?1:t.label<e.label?-1:0}),i.unshift({0:"Sequences",1:"Sequences"}),i.unshift({0:"Roadmaps",1:"Roadmaps"}),i.unshift({0:"Leave unchanged",1:"__empty__"});var u,c={title:"Configure Output: '"+t+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(u=a.getWorkflowOutput(t))&&u.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(e){s.attemptUpdateOutputLabel(a,t,e)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+n.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:i,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return r(c,[],t,e),c}function l(t){var e=t.model.attributes,i=e.inputs,n=e.node,o=n.post_job_actions,a=n.output_terminals&&Object.keys(n.output_terminals)[0];if(a){i.push({name:"pja__"+a+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(o["EmailAction"+a])),ignore:"false",help:"An email notification will be sent when the job has completed.",payload:{host:window.location.host}}),i.push({name:"pja__"+a+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(o["DeleteIntermediatesAction"+a])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var r in n.output_terminals)i.push(s(r,e))}}Object.defineProperty(e,"__esModule",{value:!0});var u=i(3),c=o(u),d=i(20),h=o(d),f=i(60),p=o(f),m=t.View.extend({initialize:function(t){var e=this,i=t.node;this.form=new h.default(c.default.merge(t,{onchange:function(){c.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:i.id,type:i.type,content_id:i.content_id,inputs:e.form.data.create()},success:function(t){i.update_field_data(t)}})}})),a(this.form),this.form.render()}}),v=t.View.extend({initialize:function(t){var e=this,i=t.node;this.form=new p.default(c.default.merge(t,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(t,i){e._customize(i),t.resolve()},buildmodel:function(t,e){e.model.get("postchange")(t,e)},postchange:function(t,o){var a=o.model.attributes,r={tool_id:a.id,tool_version:a.version,type:"tool",inputs:n.extend(!0,{},o.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",r),c.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:r,success:function(n){o.model.set(n.config_form),e._customize(o),o.update(n.config_form),o.errors(n.config_form),i.update_field_data(n),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",n),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",e),t.reject()}})}}))},_customize:function(t){var e=t.model.attributes;c.default.deepeach(e.inputs,function(t){t.type&&(-1!=["data","data_collection"].indexOf(t.type)?(t.type="hidden",t.info="Data input '"+t.name+"' ("+c.default.textify(t.extensions)+")",t.value={__class__:"RuntimeValue"}):t.fixed||(t.collapsible_value={__class__:"RuntimeValue"},t.is_workflow=t.options&&0===t.options.length||-1!=["integer","float"].indexOf(t.type)))}),c.default.deepeach(e.inputs,function(t){"conditional"===t.type&&(t.test_param.collapsible_value=void 0)}),l(t),a(t)}});e.default={Default:m,Tool:v}}).call(e,i(1),i(0))}],[278]);
\ No newline at end of file
diff --git a/static/scripts/mvc/workflow/workflow-canvas.js b/static/scripts/mvc/workflow/workflow-canvas.js
index 92f20a0a416..c844a3ae699 100644
--- a/static/scripts/mvc/workflow/workflow-canvas.js
+++ b/static/scripts/mvc/workflow/workflow-canvas.js
@@ -1 +1 @@
-define("mvc/workflow/workflow-canvas",["exports"],function(t){"use strict";function i(t,i,e){this.app=t,this.cv=i,this.cc=this.cv.find("#canvas-container"),this.overview=e,this.oc=e.find("#overview-canvas"),this.ov=e.find("#overview-viewport"),this.init_drag()}function e(t){this.panel=t}Object.defineProperty(t,"__esModule",{value:!0}),$.extend(i.prototype,{init_drag:function(){var t=this,i=function(i,e){i=Math.min(i,t.cv.width()/2),i=Math.max(i,-t.cc.width()+t.cv.width()/2),e=Math.min(e,t.cv.height()/2),e=Math.max(e,-t.cc.height()+t.cv.height()/2),t.cc.css({left:i,top:e}),t.cv.css({"background-position-x":i,"background-position-y":e}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new e(this)});var o,h;this.cv.bind("dragstart",function(){var i=$(this).offset(),e=t.cc.position();h=e.top-i.top,o=e.left-i.left}).bind("drag",function(t,e){i(e.offsetX+o,e.offsetY+h)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(e){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var o=t.cc.width(),h=t.cc.height(),s=t.oc.width(),c=t.oc.height(),n=e.pageX-t.oc.offset().left-t.ov.width()/2,a=e.pageY-t.oc.offset().top-t.ov.height()/2;i(-n/s*o,-a/c*h),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(e,o){var h=t.cc.width(),s=t.cc.height(),c=t.oc.width(),n=t.oc.height(),a=o.offsetX-t.overview.offset().left,f=o.offsetY-t.overview.offset().top;i(-a/c*h,-f/n*s)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),$("#overview-border").bind("drag",function(i,e){var o=$(this).offsetParent(),h=o.offset(),s=Math.max(o.width()-(e.offsetX-h.left),o.height()-(e.offsetY-h.top));$(this).css({width:s,height:s}),t.draw_overview()}),$("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var t=this.cc,i=this.cv,e=this.oc,o=this.ov,h=t.width(),s=t.height(),c=e.width(),n=e.height(),a=t.position();o.css({left:-a.left/h*c,top:-a.top/s*n,width:i.width()/h*c-2,height:i.height()/s*n-2})},draw_overview:function(){var t,i,e,o,h=$("#overview-canvas"),s=h.parent().parent().width(),c=h.get(0).getContext("2d"),n=$("#canvas-container").width(),a=$("#canvas-container").height(),f=this.cv.width(),r=this.cv.height();n<f&&a<r?(o=(s-(e=n/f*s))/2,i=(s-(t=a/r*s))/2):n<a?(i=0,t=s,o=(s-(e=Math.ceil(t*n/a)))/2):(e=s,o=0,i=(s-(t=Math.ceil(e*a/n)))/2),h.parent().css({left:o,top:i,width:e,height:t}),h.attr("width",e),h.attr("height",t),$.each(this.app.workflow.nodes,function(i,o){c.fillStyle="#D2C099",c.strokeStyle="#D8B365",c.lineWidth=1;var h=$(o.element),s=h.position(),f=s.left/n*e,r=s.top/a*t,v=h.width()/n*e,l=h.height()/a*t;o.errors?(c.fillStyle="#FFCCCC",c.strokeStyle="#AA6666"):void 0!==o.workflow_outputs&&o.workflow_outputs.length>0&&(c.fillStyle="#E8A92D",c.strokeStyle="#E8A92D"),c.fillRect(f,r,v,l),c.strokeRect(f,r,v,l)}),this.update_viewport_overlay()}}),$.extend(e.prototype,{test:function(t,i){clearTimeout(this.timeout);var e=t.pageX,o=t.pageY,h=(b=$(this.panel)).position(),s=b.width(),c=b.height(),n=b.parent(),a=n.width(),f=n.height(),r=n.offset(),v=r.left,l=r.top,d=v+n.width(),w=l+n.height(),p=-(s-a/2),g=-(c-f/2),u=a/2,_=f/2,k=!1;if(e-5<v){if(h.left<u){m=Math.min(23,u-h.left);b.css("left",h.left+m),k=!0}}else if(e+5>d){if(h.left>p){m=Math.min(23,h.left-p);b.css("left",h.left-m),k=!0}}else if(o-5<l){if(h.top<_){m=Math.min(23,_-h.top);b.css("top",h.top+m),k=!0}}else if(o+5>w&&h.top>g){var m=Math.min(23,h.top-p);b.css("top",h.top-m+"px"),k=!0}if(k){i();var b=this;this.timeout=setTimeout(function(){b.test(t,i)},50)}},stop:function(t,i){clearTimeout(this.timeout)}}),t.default=i});
\ No newline at end of file
+define("mvc/workflow/workflow-canvas",["exports"],function(t){"use strict";function e(t,e,i){this.app=t,this.cv=e,this.cc=this.cv.find("#canvas-container"),this.overview=i,this.oc=i.find("#overview-canvas"),this.ov=i.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function i(t){this.panel=t}Object.defineProperty(t,"__esModule",{value:!0}),$.extend(e.prototype,{init_drag:function(){var t=this,e=function(e,i){e=Math.min(e,t.cv.width()/2),e=Math.max(e,-t.cc.width()+t.cv.width()/2),i=Math.min(i,t.cv.height()/2),i=Math.max(i,-t.cc.height()+t.cv.height()/2),t.cc.css({left:e,top:i}),t.cv.css({"background-position-x":e,"background-position-y":i}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new i(this)});var o,a;this.cv.bind("dragstart",function(){var e=$(this).offset(),i=t.cc.position();a=i.top-e.top,o=i.left-e.left}).bind("drag",function(t,i){e(i.offsetX+o,i.offsetY+a)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(i){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var o=t.cc.width(),a=t.cc.height(),n=t.oc.width(),s=t.oc.height(),c=i.pageX-t.oc.offset().left-t.ov.width()/2,h=i.pageY-t.oc.offset().top-t.ov.height()/2;e(-c/n*o,-h/s*a),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(i,o){var a=t.cc.width(),n=t.cc.height(),s=t.oc.width(),c=t.oc.height(),h=o.offsetX-t.overview.offset().left,r=o.offsetY-t.overview.offset().top;e(-h/s*a,-r/c*n)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),$("#overview-border").bind("drag",function(e,i){var o=$(this).offsetParent(),a=o.offset(),n=Math.max(o.width()-(i.offsetX-a.left),o.height()-(i.offsetY-a.top));$(this).css({width:n,height:n}),t.draw_overview()}),$("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var t=this;document.addEventListener("copy",function(e){t.app.workflow.active_node&&e.clipboardData.setData("application/json",JSON.stringify({nodeId:t.app.workflow.active_node.id})),e.preventDefault()}),document.addEventListener("paste",function(e){var i;try{i=JSON.parse(e.clipboardData.getData("application/json")).nodeId}catch(t){}i&&t.app.workflow.nodes.hasOwnProperty(i)&&t.app.workflow.nodes[i].clone(),e.preventDefault()})},update_viewport_overlay:function(){var t=this.cc,e=this.cv,i=this.oc,o=this.ov,a=t.width(),n=t.height(),s=i.width(),c=i.height(),h=t.position();o.css({left:-h.left/a*s,top:-h.top/n*c,width:e.width()/a*s-2,height:e.height()/n*c-2})},draw_overview:function(){var t,e,i,o,a=$("#overview-canvas"),n=a.parent().parent().width(),s=a.get(0).getContext("2d"),c=$("#canvas-container").width(),h=$("#canvas-container").height(),r=this.cv.width(),f=this.cv.height();c<r&&h<f?(o=(n-(i=c/r*n))/2,e=(n-(t=h/f*n))/2):c<h?(e=0,t=n,o=(n-(i=Math.ceil(t*c/h)))/2):(i=n,o=0,e=(n-(t=Math.ceil(i*h/c)))/2),a.parent().css({left:o,top:e,width:i,height:t}),a.attr("width",i),a.attr("height",t),$.each(this.app.workflow.nodes,function(e,o){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=$(o.element),n=a.position(),r=n.left/c*i,f=n.top/h*t,v=a.width()/c*i,d=a.height()/h*t;o.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==o.workflow_outputs&&o.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(r,f,v,d),s.strokeRect(r,f,v,d)}),this.update_viewport_overlay()}}),$.extend(i.prototype,{test:function(t,e){clearTimeout(this.timeout);var i=t.pageX,o=t.pageY,a=(y=$(this.panel)).position(),n=y.width(),s=y.height(),c=y.parent(),h=c.width(),r=c.height(),f=c.offset(),v=f.left,d=f.top,p=v+c.width(),l=d+c.height(),w=-(n-h/2),u=-(s-r/2),g=h/2,_=r/2,k=!1;if(i-5<v){if(a.left<g){m=Math.min(23,g-a.left);y.css("left",a.left+m),k=!0}}else if(i+5>p){if(a.left>w){m=Math.min(23,a.left-w);y.css("left",a.left-m),k=!0}}else if(o-5<d){if(a.top<_){m=Math.min(23,_-a.top);y.css("top",a.top+m),k=!0}}else if(o+5>l&&a.top>u){var m=Math.min(23,a.top-w);y.css("top",a.top-m+"px"),k=!0}if(k){e();var y=this;this.timeout=setTimeout(function(){y.test(t,e)},50)}},stop:function(t,e){clearTimeout(this.timeout)}}),t.default=e});
\ No newline at end of file