diff --git a/doc/source/admin/special_topics/grt.rst b/doc/source/admin/special_topics/grt.rst index ddf5d7aaf31..01fc1ef90a3 100644 --- a/doc/source/admin/special_topics/grt.rst +++ b/doc/source/admin/special_topics/grt.rst @@ -18,7 +18,7 @@ About the Script ---------------- Once you've registered your Galaxy instance, you'll receive an instance ID and -an API key which are used to run ``scripts/grt.py``. The tool itself is very +an API key which are used to run ``scripts/grt/grt.py``. The tool itself is very simple to run. GRT will run and produce a directory of reports that can be synced with the GRT server. Every time it is run, GRT only processes the list of jobs that were run since the last time it was run. On first run, GRT will @@ -32,7 +32,7 @@ Data Privacy All data submitted to the GRT will be released into the public domain. If there are certain tools you do not want included, or certain parameters you wish to hide (e.g. because they contain API keys), then you can take advantage of the -built-in sanitization. ``scripts/grt.yml.sample`` file allows you to build up +built-in sanitization. ``scripts/grt/grt.yml.sample`` file allows you to build up sanitization for the job logs. .. code-block:: yaml @@ -72,7 +72,7 @@ Data Collection Process .. code-block:: console - cd $GALAXY; python scripts/grt.py -l debug + cd $GALAXY; python scripts/grt/grt.py -l debug ``grt.py`` connects to your galaxy database and makes queries against the @@ -99,9 +99,9 @@ Data Submission .. code-block:: console - cd $GALAXY; python scripts/grt-submit.py + cd $GALAXY; python scripts/grt/grt-submit.py -``scripts/grt-submit.py`` is a script which will submit your data to the +``scripts/grt/grt-submit.py`` is a script which will submit your data to the configured GRT server. You must first be registered with the server which will also walk you through the setup process.