diff --git a/run_functional_tests.sh b/run_functional_tests.sh
deleted file mode 120000
index 5236e32d82f..00000000000
--- a/run_functional_tests.sh
+++ /dev/null
@@ -1 +0,0 @@
-run_tests.sh
\ No newline at end of file
diff --git a/run_tests.sh b/run_tests.sh
index cce3eae0a62..da27d80adac 100755
--- a/run_tests.sh
+++ b/run_tests.sh
@@ -126,6 +126,7 @@ do
           fi 
           ;;
     -a|-api|--api)
+          with_framework_test_tools_arg="-with_framework_test_tools"
           test_script="./scripts/functional_tests.py"
           report_file="./run_api_tests.html"
           if [ $# -gt 1 ]; then
@@ -173,6 +174,7 @@ do
       -j|-casperjs|--casperjs)
           # TODO: Support running casper tests against existing
           # Galaxy instances.
+          with_framework_test_tools_arg="-with_framework_test_tools"
           if [ $# -gt 1 ]; then
               casperjs_test_name=$2
               shift 2