From 5df61d91f3ead709692f36d2dc2ba5f635b6e548 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Thu, 9 Nov 2017 11:16:40 -0500 Subject: [PATCH 1/3] fi xlink to deps --- README.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.rst b/README.rst index 50775f18ff8..edadcc36894 100644 --- a/README.rst +++ b/README.rst @@ -10,7 +10,7 @@ The latest information about Galaxy is available via `https://galaxyproject.org/ .. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg :target: https://webchat.freenode.net/?channels=galaxyproject :alt: Chat on irc - + .. image:: https://img.shields.io/badge/chat-gitter-blue.svg :target: https://gitter.im/galaxyproject/Lobby :alt: Chat on gitter @@ -54,7 +54,7 @@ https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/ Not all dependencies are included for the tools provided in the sample ``tool_conf.xml``. A full list of external dependencies is available at: -https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies +https://galaxyproject.org/admin/config/tool-dependencies/ Issues and Galaxy Development ============================= From b0c7d8da23a6fbf7cef58ba9a0ae5a8c5c9731a2 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Thu, 9 Nov 2017 11:38:45 -0500 Subject: [PATCH 2/3] bring readme on par with features --- README.rst | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/README.rst b/README.rst index edadcc36894..64a88167088 100644 --- a/README.rst +++ b/README.rst @@ -44,17 +44,17 @@ browser at: http://localhost:8080 +Configuration & Tools +===================== + You may wish to make changes from the default configuration. This can be -done in the ``config/galaxy.ini`` file. Tools can be either installed -from the Tool Shed or added manually. For details please see the Galaxy -wiki: +done in the ``config/galaxy.ini`` file. -https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/ - -Not all dependencies are included for the tools provided in the sample -``tool_conf.xml``. A full list of external dependencies is available at: - -https://galaxyproject.org/admin/config/tool-dependencies/ +Tools can be either installed from the Tool Shed or added manually. + For details please see the `tutorial `__. +Note that not all dependencies for the tools provided in the +``tool_conf.xml.sample`` are included. To install them please visit +"Manage dependencies" in the admin interface. Issues and Galaxy Development ============================= @@ -64,4 +64,4 @@ Please see `CONTRIBUTING.md `_ . Roadmap ============================= -Interested in the next steps for Galaxy? Take a look here: https://github.com/galaxyproject/galaxy/issues/1928 +Interested in the next steps for Galaxy? Take a look at the `roadmap `__ From c1421fda32e7c74905a3920681b2abf397f759c1 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Thu, 9 Nov 2017 12:02:06 -0500 Subject: [PATCH 3/3] add dot --- README.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.rst b/README.rst index 64a88167088..634314baa10 100644 --- a/README.rst +++ b/README.rst @@ -64,4 +64,4 @@ Please see `CONTRIBUTING.md `_ . Roadmap ============================= -Interested in the next steps for Galaxy? Take a look at the `roadmap `__ +Interested in the next steps for Galaxy? Take a look at the `roadmap `__.