From 5f2adab86e29e14ac82395f26402552d91738353 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 3 Feb 2026 15:05:37 +0100 Subject: [PATCH 1/2] Create version 25.1.1 --- client/package.json | 2 +- lib/galaxy/version.py | 2 +- package.json | 4 +- packages/app/HISTORY.rst | 31 +++++++++- packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 8 +-- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 25 ++++++++- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 29 +++++++++- packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 13 ++++- packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 11 +++- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 8 +-- packages/job_metrics/setup.cfg | 2 +- packages/meta/HISTORY.rst | 81 +++++++++++++++++++++++++-- packages/meta/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 +-- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 8 +-- packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 12 +++- packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 11 +++- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 24 +++++++- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 18 +++++- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 11 +++- packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 8 +-- packages/tool_shed/setup.cfg | 2 +- packages/tool_shed_schema/HISTORY.rst | 8 +-- packages/tool_shed_schema/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 23 +++++++- packages/tool_util/setup.cfg | 2 +- packages/tool_util_models/HISTORY.rst | 8 +-- packages/tool_util_models/setup.cfg | 2 +- packages/tours/HISTORY.rst | 8 +-- packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 8 +-- packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 12 +++- packages/web_apps/setup.cfg | 2 +- packages/web_client/HISTORY.rst | 8 +-- packages/web_client/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 8 +-- packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 8 +-- packages/web_stack/setup.cfg | 2 +- 53 files changed, 338 insertions(+), 117 deletions(-) diff --git a/client/package.json b/client/package.json index cf1c2847543..3f2862b13ee 100644 --- a/client/package.json +++ b/client/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy-client", - "version": "25.1.1.dev0", + "version": "25.1.1", "description": "Galaxy client application build system", "keywords": [ "galaxy" diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index edc9f406fa0..7ee1dfb312d 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "25.1" -VERSION_MINOR = "1.dev0" +VERSION_MINOR = "1" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/package.json b/package.json index b0ce7200a06..5a8d22ff790 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy", - "version": "25.1.0", + "version": "25.1.1", "description": ".. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg :alt: Galaxy Logo", "main": "index.js", "scripts": { @@ -17,7 +17,7 @@ }, "homepage": "https://github.com/galaxyproject/galaxy#readme", "dependencies": { - "@galaxyproject/galaxy-client": "25.1.0", + "@galaxyproject/galaxy-client": "25.1.1", "cpy-cli": "^5.0.0" }, "packageManager": "yarn@1.22.22+sha512.a6b2f7906b721bba3d67d4aff083df04dad64c399707841b7acf00f6b133b7ac24255f2652fa22ae3534329dc6180534e98d17432037ff6fd140556e2bb3137e" diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index d93edf0a84c..2a51e2d5200 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,36 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Record input parameter invocation inputs by `@mvdbeek `_ in `#21452 `_ +* Maintain column definitions on map over by `@mvdbeek `_ in `#21468 `_ +* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo `_ in `#21484 `_ +* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek `_ in `#21488 `_ +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ +* Fix type annotation for invocation report ``errors`` field by `@mvdbeek `_ in `#21508 `_ +* Filter out failed_metadata HDAs from job cache by `@mvdbeek `_ in `#21544 `_ +* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek `_ in `#21557 `_ +* Fix Pulsar with ``default_file_action: none`` by `@mvdbeek `_ in `#21578 `_ +* Fix condor typo by `@gsaudade99 `_ in `#21651 `_ +* Fix HTCondor runner unwatching jobs when stopping containers by `@kysrpex `_ in `#21656 `_ +* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek `_ in `#21712 `_ +* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek `_ in `#21719 `_ +* Strip inline comments in conditional requirements by `@mvdbeek `_ in `#21720 `_ + +============ +Enhancements +============ + +* Add sample sheet support to many database operation tools by `@mvdbeek `_ in `#21465 `_ +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 2044e97df4e..572db68e142 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index a01383c0531..f3a15d34177 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index dfc75edaa15..516da1aa78a 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 232759050c8..dfefdd1ccef 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,30 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Use quotes for Galaxy citation bibtex by `@bernt-matthias `_ in `#21563 `_ +* Add split paired or unpaired tool to sample tool conf by `@bernt-matthias `_ in `#21647 `_ +* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek `_ in `#21719 `_ + +============ +Enhancements +============ + +* add new datatype for kmindex index data by `@Smeds `_ in `#21429 `_ +* Add Sourmash sig new datatype by `@SaimMomin12 `_ in `#21469 `_ +* Adds object_expires_after_days example usage to sample config by `@davelopez `_ in `#21547 `_ +* Add a few datatypes from the digital humanities domain by `@bgruening `_ in `#21596 `_ +* Add new datatype pg and hg for pangenomics by `@SaimMomin12 `_ in `#21620 `_ +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ +* Add new datatypes required for VG tool by `@SaimMomin12 `_ in `#21644 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 0b5c1e42035..08954173d83 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index 00483d3da52..59c7d7cbc3c 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,34 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Sample sheet column fix by `@mvdbeek `_ in `#21446 `_ +* Maintain column definitions on map over by `@mvdbeek `_ in `#21468 `_ +* Add missing test file for sig datatype by `@SaimMomin12 `_ in `#21473 `_ +* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo `_ in `#21484 `_ +* Add missing ending newline to test.sig test data file by `@nsoranzo `_ in `#21485 `_ +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ +* Fix exception message to enable debugging of missing dataset issue. by `@jmchilton `_ in `#21504 `_ +* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo `_ in `#21518 `_ +* Fix job cache collection copy by `@mvdbeek `_ in `#21558 `_ +* Fix #21542 - allow workbook bootstrap generation for sample sheet collection types. by `@jmchilton `_ in `#21584 `_ +* Fix race condition in workflow collection populated state check by `@mvdbeek `_ in `#21613 `_ +* Fix collection job state not preserved during history export/import by `@mvdbeek `_ in `#21716 `_ + +============ +Enhancements +============ + +* Add Sourmash sig new datatype by `@SaimMomin12 `_ in `#21469 `_ +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index a64ff6365e5..7590e2c71dd 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index af066e8c26e..78d29b29892 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,18 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo `_ in `#21518 `_ +* Supports Dataverse file access via both persistent and database IDs by `@davelopez `_ in `#21569 `_ +* Harden Dataverse integration by `@davelopez `_ in `#21624 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 2fcc33c43ce..19dfe79f7d2 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index d9e2d6b3b87..0785bddbad8 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek `_ in `#21557 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 345f0f29504..12790eab1a4 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index 6fba6e8f587..ad68fe9fc54 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index d3ae8e7424a..de49f1d5002 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/meta/HISTORY.rst b/packages/meta/HISTORY.rst index 98d4a44934a..f05ff2005f7 100644 --- a/packages/meta/HISTORY.rst +++ b/packages/meta/HISTORY.rst @@ -3,11 +3,84 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Sample sheet column fix by `@mvdbeek `_ in `#21446 `_ +* Record input parameter invocation inputs by `@mvdbeek `_ in `#21452 `_ +* Remove ref and polish release-drafter workflow by `@ahmedhamidawan `_ in `#21467 `_ +* Maintain column definitions on map over by `@mvdbeek `_ in `#21468 `_ +* Add missing test file for sig datatype by `@SaimMomin12 `_ in `#21473 `_ +* Remove `release-drafter` workflow and add a release config file to improve generated notes by `@ahmedhamidawan `_ in `#21478 `_ +* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo `_ in `#21484 `_ +* Add missing ending newline to test.sig test data file by `@nsoranzo `_ in `#21485 `_ +* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek `_ in `#21488 `_ +* change locuszoom package version to 0.0.7 by `@elmedjadjirayane `_ in `#21494 `_ +* Pin release prebuilt client package exactly by `@dannon `_ in `#21498 `_ +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ +* Fix exception message to enable debugging of missing dataset issue. by `@jmchilton `_ in `#21504 `_ +* Fix type annotation for invocation report ``errors`` field by `@mvdbeek `_ in `#21508 `_ +* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo `_ in `#21518 `_ +* Filter out failed_metadata HDAs from job cache by `@mvdbeek `_ in `#21544 `_ +* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek `_ in `#21557 `_ +* Fix job cache collection copy by `@mvdbeek `_ in `#21558 `_ +* Show "Expires today" instead of "Expires soon" in Expiration Warning by `@mvdbeek `_ in `#21560 `_ +* Use quotes for Galaxy citation bibtex by `@bernt-matthias `_ in `#21563 `_ +* Supports Dataverse file access via both persistent and database IDs by `@davelopez `_ in `#21569 `_ +* Fix passing user id to preferences by `@guerler `_ in `#21576 `_ +* Fix Pulsar with ``default_file_action: none`` by `@mvdbeek `_ in `#21578 `_ +* Fix #21542 - allow workbook bootstrap generation for sample sheet collection types. by `@jmchilton `_ in `#21584 `_ +* Add belated deprecation of Python 3.9 support by `@nsoranzo `_ in `#21598 `_ +* Fix loading of credentials when associated tools are missing by `@arash77 `_ in `#21599 `_ +* Fix race condition in workflow collection populated state check by `@mvdbeek `_ in `#21613 `_ +* Harden Dataverse integration by `@davelopez `_ in `#21624 `_ +* Add split paired or unpaired tool to sample tool conf by `@bernt-matthias `_ in `#21647 `_ +* Fix secret credential editing and add clear button by `@itisAliRH `_ in `#21650 `_ +* Fix condor typo by `@gsaudade99 `_ in `#21651 `_ +* Fix HTCondor runner unwatching jobs when stopping containers by `@kysrpex `_ in `#21656 `_ +* Fix data manager .loc file selection logic by `@jdavcs `_ in `#21664 `_ +* Fixes storage management check for anonymous users by `@davelopez `_ in `#21680 `_ +* Resets selection filter when loading dialog by `@davelopez `_ in `#21681 `_ +* Fixes duplicated entries in "share with individual users" component by `@davelopez `_ in `#21683 `_ +* Simplify docker build, use node as specified in requirements by `@mvdbeek `_ in `#21695 `_ +* Remove Discover Tools button in the workflow tool panel by `@ahmedhamidawan `_ in `#21697 `_ +* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek `_ in `#21712 `_ +* Fix collection job state not preserved during history export/import by `@mvdbeek `_ in `#21716 `_ +* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek `_ in `#21719 `_ +* Strip inline comments in conditional requirements by `@mvdbeek `_ in `#21720 `_ +* Exclude node_modules at all depths in Docker builds by `@mvdbeek `_ in `#21721 `_ + +============ +Enhancements +============ + +* add new datatype for kmindex index data by `@Smeds `_ in `#21429 `_ +* Add sample sheet support to many database operation tools by `@mvdbeek `_ in `#21465 `_ +* Add Sourmash sig new datatype by `@SaimMomin12 `_ in `#21469 `_ +* Add new jupyter version by `@bgruening `_ in `#21531 `_ +* Adds object_expires_after_days example usage to sample config by `@davelopez `_ in `#21547 `_ +* Add tool credentials system documentation and schema updates by `@arash77 `_ in `#21561 `_ +* Add a few datatypes from the digital humanities domain by `@bgruening `_ in `#21596 `_ +* Add new datatype pg and hg for pangenomics by `@SaimMomin12 `_ in `#21620 `_ +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ +* Add new datatypes required for VG tool by `@SaimMomin12 `_ in `#21644 `_ +* Document security considerations for using secrets by `@bernt-matthias `_ in `#21654 `_ + +============= +Other changes +============= + +* Update 25.1 release notes with config changes by `@ahmedhamidawan `_ in `#21444 `_ +* Fix 25.1 release month on user facing notes by `@ahmedhamidawan `_ in `#21450 `_ +* Fix sample_sheet column display by `@mvdbeek `_ in `#21457 `_ +* Merge 25.1 into master by `@ahmedhamidawan `_ in `#21482 `_ +* Improve tempdir cleanup in integration tests by `@mvdbeek `_ in `#21520 `_ ------------------- 25.1.0 (2025-12-12) @@ -181,7 +254,7 @@ Enhancements * Implement Data Landing Requests by `@jmchilton `_ in `#20592 `_ * Update Python dependencies by `@galaxybot `_ in `#20601 `_ * Improve BreadcrumbHeading and add unit tests by `@itisAliRH `_ in `#20618 `_ -* Remove vue-tsc diff comparison from CI by `@dannon `_ in `#20620 `_ +* Remove vue-tsc diff comparison from CI by `@dannon `_ in `#20620 `_ * Add a "Debug" (email report) tab to Workflow Invocations by `@ahmedhamidawan `_ in `#20624 `_ * Clean up code from pyupgrade by `@nsoranzo `_ in `#20642 `_ * Update location of latest tpv shared db by `@nuwang `_ in `#20651 `_ diff --git a/packages/meta/setup.cfg b/packages/meta/setup.cfg index 94c86eedcb2..86be8ebf041 100644 --- a/packages/meta/setup.cfg +++ b/packages/meta/setup.cfg @@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index a00ce14c951..04954739f0e 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index 9dbe5257f8c..c2553e2254b 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 629752130e6..21d545355c3 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index eb3fa668335..6aa87704e6c 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index e9483503b68..e08a7f1dd83 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ +* Fix type annotation for invocation report ``errors`` field by `@mvdbeek `_ in `#21508 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 1ea42951020..25517b551d7 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index f38fa5d21b0..c9de3a60451 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 022c6f99324..8c6c5a641a3 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index a92ee7c2405..a19b69265f2 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,29 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Sample sheet column fix by `@mvdbeek `_ in `#21446 `_ +* Record input parameter invocation inputs by `@mvdbeek `_ in `#21452 `_ +* Maintain column definitions on map over by `@mvdbeek `_ in `#21468 `_ +* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek `_ in `#21488 `_ +* Fix type annotation for invocation report ``errors`` field by `@mvdbeek `_ in `#21508 `_ +* Fix job cache collection copy by `@mvdbeek `_ in `#21558 `_ +* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek `_ in `#21712 `_ +* Fix collection job state not preserved during history export/import by `@mvdbeek `_ in `#21716 `_ + +============ +Enhancements +============ + +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index ed7b6bdbce8..8b82e0d872a 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 39c651116c0..52455cb59b9 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Sample sheet column fix by `@mvdbeek `_ in `#21446 `_ +* Usability fixes for sample sheet selection. by `@jmchilton `_ in `#21503 `_ + +============ +Enhancements +============ + +* Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index a1c6ab698c5..d0170864d53 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 61f81d89a20..2d31cc89658 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +============= +Other changes +============= + +* Improve tempdir cleanup in integration tests by `@mvdbeek `_ in `#21520 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index f2fef1cdc30..02f7376e6d1 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 76f342b50fa..72a366da62e 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 97233441c20..1e3afae08ca 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/tool_shed_schema/HISTORY.rst b/packages/tool_shed_schema/HISTORY.rst index 82f4da7ad7c..53ce54fd95e 100644 --- a/packages/tool_shed_schema/HISTORY.rst +++ b/packages/tool_shed_schema/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/tool_shed_schema/setup.cfg b/packages/tool_shed_schema/setup.cfg index ea3ed2d3320..63649cd2d13 100644 --- a/packages/tool_shed_schema/setup.cfg +++ b/packages/tool_shed_schema/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed-schema url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index f7e0a2fdb9d..0f5b3213917 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,28 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Fix data manager .loc file selection logic by `@jdavcs `_ in `#21664 `_ + +============ +Enhancements +============ + +* Document security considerations for using secrets by `@bernt-matthias `_ in `#21654 `_ + +============= +Other changes +============= + +* Improve tempdir cleanup in integration tests by `@mvdbeek `_ in `#21520 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index be4bd1a7592..63ebf309484 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/tool_util_models/HISTORY.rst b/packages/tool_util_models/HISTORY.rst index a64e4bd703e..1ae810fc4c3 100644 --- a/packages/tool_util_models/HISTORY.rst +++ b/packages/tool_util_models/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/tool_util_models/setup.cfg b/packages/tool_util_models/setup.cfg index de4062825a0..8e1577326cc 100644 --- a/packages/tool_util_models/setup.cfg +++ b/packages/tool_util_models/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util-models url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index ab4d56273ba..9ed79f583af 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 25a2f1597cb..99e25bcdb92 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 9d3ef399571..2561dcc09e4 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 24f15c01953..5b378087e5c 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index ff1a7e7d399..5eb21d8c332 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ +------------------- +25.1.1 (2026-02-03) +------------------- +========= +Bug fixes +========= + +* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo `_ in `#21484 `_ +* Fix loading of credentials when associated tools are missing by `@arash77 `_ in `#21599 `_ ------------------- 25.1.0 (2025-12-12) diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 3ac503b60d1..c565bc1009e 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/web_client/HISTORY.rst b/packages/web_client/HISTORY.rst index 7d5f3c8fb2e..b87cb95b824 100644 --- a/packages/web_client/HISTORY.rst +++ b/packages/web_client/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/web_client/setup.cfg b/packages/web_client/setup.cfg index 8c52f394741..e75e2077bc3 100644 --- a/packages/web_client/setup.cfg +++ b/packages/web_client/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-client url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 9aca079dc2c..fb18f453e12 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index 9d5c474871f..8aa1bc8f1f0 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 71de38cc620..3a67f443665 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -25.1.1.dev0 ------------ - +------------------- +25.1.1 (2026-02-03) +------------------- +No recorded changes since last release ------------------- 25.1.0 (2025-12-12) diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 4437216b230..8c3c55edf95 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 25.1.1.dev0 +version = 25.1.1 [options] include_package_data = True From ef9f0996319627ef17e7cbfd1af0f7a3ce1acaf7 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 3 Feb 2026 15:05:40 +0100 Subject: [PATCH 2/2] Start work on 25.1.2.dev0 --- client/package.json | 2 +- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 6 ++++++ packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 6 ++++++ packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 6 ++++++ packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 6 ++++++ packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 6 ++++++ packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 6 ++++++ packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 6 ++++++ packages/job_metrics/setup.cfg | 2 +- packages/meta/HISTORY.rst | 6 ++++++ packages/meta/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 6 ++++++ packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 6 ++++++ packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 6 ++++++ packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 6 ++++++ packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 6 ++++++ packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 6 ++++++ packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 6 ++++++ packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 6 ++++++ packages/tool_shed/setup.cfg | 2 +- packages/tool_shed_schema/HISTORY.rst | 6 ++++++ packages/tool_shed_schema/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 6 ++++++ packages/tool_util/setup.cfg | 2 +- packages/tool_util_models/HISTORY.rst | 6 ++++++ packages/tool_util_models/setup.cfg | 2 +- packages/tours/HISTORY.rst | 6 ++++++ packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 6 ++++++ packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 6 ++++++ packages/web_apps/setup.cfg | 2 +- packages/web_client/HISTORY.rst | 6 ++++++ packages/web_client/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 6 ++++++ packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 6 ++++++ packages/web_stack/setup.cfg | 2 +- 52 files changed, 177 insertions(+), 27 deletions(-) diff --git a/client/package.json b/client/package.json index 3f2862b13ee..3d4ada95ff1 100644 --- a/client/package.json +++ b/client/package.json @@ -1,6 +1,6 @@ { "name": "@galaxyproject/galaxy-client", - "version": "25.1.1", + "version": "25.1.2.dev0", "description": "Galaxy client application build system", "keywords": [ "galaxy" diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index 7ee1dfb312d..030e41bfda5 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "25.1" -VERSION_MINOR = "1" +VERSION_MINOR = "2.dev0" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 2a51e2d5200..8d3f60edaef 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 572db68e142..7705fad8db8 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index f3a15d34177..c3fc34decf4 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index 516da1aa78a..feae392007d 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index dfefdd1ccef..83f3b7d4291 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 08954173d83..8899c21c79a 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index 59c7d7cbc3c..d3f6f67ce75 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 7590e2c71dd..320e0a6f145 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 78d29b29892..8f39ed7a534 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 19dfe79f7d2..54a42d68b77 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 0785bddbad8..ec8e1f5d9ac 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 12790eab1a4..85d09f70a78 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index ad68fe9fc54..f67bbf1c13d 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index de49f1d5002..b839329c34f 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/meta/HISTORY.rst b/packages/meta/HISTORY.rst index f05ff2005f7..2489e3f01e8 100644 --- a/packages/meta/HISTORY.rst +++ b/packages/meta/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/meta/setup.cfg b/packages/meta/setup.cfg index 86be8ebf041..f9e06382a42 100644 --- a/packages/meta/setup.cfg +++ b/packages/meta/setup.cfg @@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 04954739f0e..5ec1aa10ec5 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index c2553e2254b..722653d6fbe 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 21d545355c3..260a330191e 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 6aa87704e6c..f9d53b9639b 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index e08a7f1dd83..5b1a449de17 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 25517b551d7..cb4cf47fb9c 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index c9de3a60451..1121fd2f609 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 8c6c5a641a3..f3a86f26170 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index a19b69265f2..d9dc04d843b 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 8b82e0d872a..bcc9fa0857c 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 52455cb59b9..2d9d2d2fde3 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index d0170864d53..9397c4e3146 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 2d31cc89658..6e0a2897e11 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 02f7376e6d1..b1b1f6e86c4 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 72a366da62e..1fa18881471 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 1e3afae08ca..5293b914282 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/tool_shed_schema/HISTORY.rst b/packages/tool_shed_schema/HISTORY.rst index 53ce54fd95e..a0a0ab60b77 100644 --- a/packages/tool_shed_schema/HISTORY.rst +++ b/packages/tool_shed_schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/tool_shed_schema/setup.cfg b/packages/tool_shed_schema/setup.cfg index 63649cd2d13..bf2c6a96513 100644 --- a/packages/tool_shed_schema/setup.cfg +++ b/packages/tool_shed_schema/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed-schema url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 0f5b3213917..a86bb88cc4b 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index 63ebf309484..9ef9ea5f92e 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/tool_util_models/HISTORY.rst b/packages/tool_util_models/HISTORY.rst index 1ae810fc4c3..0cf958619a1 100644 --- a/packages/tool_util_models/HISTORY.rst +++ b/packages/tool_util_models/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/tool_util_models/setup.cfg b/packages/tool_util_models/setup.cfg index 8e1577326cc..396b275a6d2 100644 --- a/packages/tool_util_models/setup.cfg +++ b/packages/tool_util_models/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util-models url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 9ed79f583af..2515847f5a9 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 99e25bcdb92..c4ccd97025d 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 2561dcc09e4..0dd5ea3e1e5 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 5b378087e5c..40b2d27eb72 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index 5eb21d8c332..ae606d1ac35 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index c565bc1009e..deb6ab17b12 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/web_client/HISTORY.rst b/packages/web_client/HISTORY.rst index b87cb95b824..128f9792e89 100644 --- a/packages/web_client/HISTORY.rst +++ b/packages/web_client/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/web_client/setup.cfg b/packages/web_client/setup.cfg index e75e2077bc3..fee73b6fa5a 100644 --- a/packages/web_client/setup.cfg +++ b/packages/web_client/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-client url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index fb18f453e12..c81334482ca 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index 8aa1bc8f1f0..92cba9bf997 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 3a67f443665..d4ae7814757 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +25.1.2.dev0 +----------- + + + ------------------- 25.1.1 (2026-02-03) ------------------- diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 8c3c55edf95..c65ec5b7888 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 25.1.1 +version = 25.1.2.dev0 [options] include_package_data = True