From 807dd81fef4906f6249982c2a249692374ab6f8e Mon Sep 17 00:00:00 2001
From: Daniel Blankenberg <dan.blankenberg@gmail.com>
Date: Fri, 17 Jul 2015 16:31:56 -0400
Subject: [PATCH] Turn of sanitizer for  in __SET_METADATA__ autodetect
 metadata tool. Fixes issue that appears as a result of PR #474, but also
 could occur under corner-cases with interestlying named temp filenames. Also,
 add quotes around configfile filename.

---
 lib/galaxy/datatypes/registry.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/lib/galaxy/datatypes/registry.py b/lib/galaxy/datatypes/registry.py
index 856096292c4..07ef6672215 100644
--- a/lib/galaxy/datatypes/registry.py
+++ b/lib/galaxy/datatypes/registry.py
@@ -645,11 +645,13 @@ class Registry( object ):
                   <requirement type="package">samtools</requirement>
               </requirements>
               <action module="galaxy.tools.actions.metadata" class="SetMetadataToolAction"/>
-              <command>python $set_metadata $__SET_EXTERNAL_METADATA_COMMAND_LINE__</command>
+              <command>python "${set_metadata}" ${__SET_EXTERNAL_METADATA_COMMAND_LINE__}</command>
               <inputs>
                 <param format="data" name="input1" type="data" label="File to set metadata on."/>
                 <param name="__ORIGINAL_DATASET_STATE__" type="hidden" value=""/>
-                <param name="__SET_EXTERNAL_METADATA_COMMAND_LINE__" type="hidden" value=""/>
+                <param name="__SET_EXTERNAL_METADATA_COMMAND_LINE__" type="hidden" value="">
+                  <sanitizer sanitize="False"/>
+                </param>
               </inputs>
               <configfiles>
                 <configfile name="set_metadata">from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()</configfile>