diff --git a/lib/galaxy_utils/sequence/fastq.py b/lib/galaxy_utils/sequence/fastq.py index 7f7e0489da6..eb1a2f6a8c3 100644 --- a/lib/galaxy_utils/sequence/fastq.py +++ b/lib/galaxy_utils/sequence/fastq.py @@ -1,4 +1,4 @@ -#Dan Blankenberg +##Dan Blankenberg import math import string import transform @@ -126,12 +126,10 @@ class fastqSequencingRead( SequencingRead ): new_encoding = force_quality_encoding if new_encoding == 'ascii': new_class.transform_scores_to_valid_range_ascii( score_list ) - restricted_scores = map( str, score_list ) - new_read.quality = "".join( restricted_scores ) + new_read.quality = "".join( score_list ) else: # decimal new_class.transform_scores_to_valid_range( score_list ) - restricted_scores = map( str, score_list ) - new_read.quality = "%s " % " ".join( restricted_scores ) #need trailing space to be valid decimal fastq + new_read.quality = "%s " % " ".join( score_list ) #need trailing space to be valid decimal fastq return new_read def get_sequence( self ): return self.sequence